Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44011 | Canola | plastid | 99.39 | 89.25 |
| Bra034692.1-P | Field mustard | cytosol, plastid | 78.06 | 67.67 |
| AT3G13300.1 | Thale cress | cytosol | 75.2 | 64.51 |
| AT3G13290.1 | Thale cress | cytosol | 74.33 | 63.96 |
| Zm00001d008821_P001 | Maize | extracellular | 7.03 | 57.04 |
| Zm00001d048003_P001 | Maize | extracellular | 7.55 | 51.18 |
| Solyc03g071660.1.1 | Tomato | cytosol | 8.07 | 49.73 |
| KRG98417 | Soybean | cytosol | 47.88 | 49.46 |
| Solyc09g055300.1.1 | Tomato | cytosol | 3.73 | 48.31 |
| KRH46493 | Soybean | plastid | 54.64 | 46.81 |
| GSMUA_Achr3P10880_001 | Banana | plastid | 48.05 | 46.4 |
| VIT_19s0015g01380.t01 | Wine grape | plastid | 56.37 | 46.4 |
| GSMUA_Achr5P04250_001 | Banana | plastid | 49.18 | 46.36 |
| VIT_03s0091g01220.t01 | Wine grape | cytosol | 12.75 | 44.95 |
| Solyc07g021140.1.1 | Tomato | cytosol | 5.03 | 44.27 |
| Solyc07g065950.2.1 | Tomato | plastid | 53.86 | 44.14 |
| GSMUA_Achr3P04200_001 | Banana | plastid | 46.57 | 44.05 |
| Solyc10g005920.2.1 | Tomato | plastid | 53.69 | 43.65 |
| GSMUA_Achr9P19760_001 | Banana | plastid | 47.79 | 41.46 |
| Os06t0300800-01 | Rice | plasma membrane | 47.44 | 41.0 |
| EES05610 | Sorghum | plastid | 47.18 | 40.69 |
| TraesCS7A01G220400.4 | Wheat | plastid | 45.71 | 40.32 |
| TraesCS7B01G127000.4 | Wheat | plastid | 45.71 | 40.29 |
| Os02t0722800-01 | Rice | plasma membrane | 46.75 | 40.25 |
| TraesCS7D01G221700.1 | Wheat | plastid | 44.75 | 40.25 |
| TraesCS6A01G286100.3 | Wheat | golgi | 44.15 | 40.17 |
| Zm00001d017883_P002 | Maize | plastid | 47.35 | 39.97 |
| TraesCS6D01G266500.2 | Wheat | cytosol, plastid | 43.45 | 37.93 |
| Solyc12g062490.1.1 | Tomato | nucleus, plastid | 3.99 | 37.7 |
| TraesCS6B01G314800.3 | Wheat | plastid | 44.32 | 37.68 |
| HORVU7Hr1G045240.3 | Barley | plastid | 26.02 | 37.41 |
| Zm00001d051678_P001 | Maize | cytosol | 44.41 | 36.91 |
| HORVU6Hr1G071910.3 | Barley | cytosol, nucleus, plastid | 44.23 | 36.74 |
| Zm00001d002560_P001 | Maize | mitochondrion | 15.0 | 36.34 |
| Solyc02g005370.1.1 | Tomato | cytosol | 4.34 | 36.23 |
| Solyc11g039850.1.1 | Tomato | cytosol | 3.21 | 35.58 |
| VIT_03s0091g01230.t01 | Wine grape | nucleus | 6.85 | 30.27 |
Protein Annotations
| Gene3D:1.10.220.100 | MapMan:16.8.2.2.4 | Gene3D:2.130.10.10 | EnsemblPlantsGene:Bra034693 | EnsemblPlants:Bra034693.1 | EnsemblPlants:Bra034693.1-P |
| InterPro:EDC4_WD40 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | UniProt:M4F0U8 | PFAM:PF16529 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR15598 |
| PANTHER:PTHR15598:SF7 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000254808E | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
AT3G13300 (E=0.0) VCS | VCS (VARICOSE); nucleotide binding / protein homodimerization
Coordinates
chrA05:-:21016329..21021198
Molecular Weight (calculated)
125611.0 Da
IEP (calculated)
5.555
GRAVY (calculated)
-0.320
Length
1153 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGRRLTGEHA VYDVDVRLHG EIQPQLEVTP ITKYGSDPQL VVGRQIAVSK VYICYGLKGG SIRVLNINTA LRALFRGHSQ RVTDMAFFAQ DVHLLASVSL
0101: DGKVFVWKIS EGSEGDDDPQ ITGKIVLALQ ILGEEDTKHP RVCWHSHKQE ILVVSIGKHV LLIDTSKVGR GEVFSSESPI QCHLDKLVDG VKIVGKHDGE
0201: VTDLSICQWM TTRLVSSSVD GTVKIWKDFM AQPVAVLRPH DGYPVNSSTF VTSPERPDHI ILITGGPLNR EMKIWVPAGE EGWLLSAESE SWNCTQKLDL
0301: KSSTEPRAEM AFFNQITALS EAGLLLLANA KRNAIYAVHL DYGSSPADTR MDFLSEFTVT MPILSFIGTH DPSEEPIVKV YCVQTQAIQQ YTLDLCLCLP
0401: PSGEENVGLE KSDSSVSREA NLVDGMSEPS GLKPTEFPSV DSVPKPSILV NRSQGSASGD TTAPAIVPSN SEPRTSGLLS DTNGGGSAYG TATQLPLSPR
0501: LSSKLSGYQT PVEAFEQVES RYELSGKAPS ADYGVDKHTF EESSSSEEKN ITPDDDESGI RSSPSFFKHP THLVKPSEFS MGVSSAEAPV ATEDKSDRVS
0601: NDASGTEIEA SEVGEVNYHE ETMNGTSESR EKIFYSQALN LSTEMARDCY PSTDETKAYE QSVHADDSLE SRDVSAKIPE LVSSSGLPQS AATNSKGKKQ
0701: KAKSSQNPNS SADSYNEKSQ SLSHPLTDSL PQILAMQETM NQIMVSQKEM QRQLSNAVNG PVTKEGKRLE VAIGRMTERT SKLVKSNADA LLARFQEETV
0801: KSEKAMRDHS QHIVNATTNF MSKELNAVFE KTVKKEFAAI VPAIARAATP AIEKTISSAI TESFQRGLGD KAVNQLDRSV NSKIEATLTR HIQTQFQTSA
0901: IPVLQEALKS GLEASLIPSF ERLCKTMLEQ VDTALEKGIA EHTNAAQQRF EAGHSQLAHT LKETITSTSS VAQALSRALA ESQRNRSGVL TGGSDPSVTQ
1001: VSKGPVATLL EKVEAPMDPT AQLSRLVSEG KYEESFTSAL QRSDVSIVSW LCAQVDLHRL LAMNPLPLSQ GVLLSLLQQL ACDISKDTSR KLGWMTDVVT
1101: AINPSDQMIV VHARRIFEQV YQILHHQLNA PGSDVSAIRL IMHVLNSMLM GCK
0101: DGKVFVWKIS EGSEGDDDPQ ITGKIVLALQ ILGEEDTKHP RVCWHSHKQE ILVVSIGKHV LLIDTSKVGR GEVFSSESPI QCHLDKLVDG VKIVGKHDGE
0201: VTDLSICQWM TTRLVSSSVD GTVKIWKDFM AQPVAVLRPH DGYPVNSSTF VTSPERPDHI ILITGGPLNR EMKIWVPAGE EGWLLSAESE SWNCTQKLDL
0301: KSSTEPRAEM AFFNQITALS EAGLLLLANA KRNAIYAVHL DYGSSPADTR MDFLSEFTVT MPILSFIGTH DPSEEPIVKV YCVQTQAIQQ YTLDLCLCLP
0401: PSGEENVGLE KSDSSVSREA NLVDGMSEPS GLKPTEFPSV DSVPKPSILV NRSQGSASGD TTAPAIVPSN SEPRTSGLLS DTNGGGSAYG TATQLPLSPR
0501: LSSKLSGYQT PVEAFEQVES RYELSGKAPS ADYGVDKHTF EESSSSEEKN ITPDDDESGI RSSPSFFKHP THLVKPSEFS MGVSSAEAPV ATEDKSDRVS
0601: NDASGTEIEA SEVGEVNYHE ETMNGTSESR EKIFYSQALN LSTEMARDCY PSTDETKAYE QSVHADDSLE SRDVSAKIPE LVSSSGLPQS AATNSKGKKQ
0701: KAKSSQNPNS SADSYNEKSQ SLSHPLTDSL PQILAMQETM NQIMVSQKEM QRQLSNAVNG PVTKEGKRLE VAIGRMTERT SKLVKSNADA LLARFQEETV
0801: KSEKAMRDHS QHIVNATTNF MSKELNAVFE KTVKKEFAAI VPAIARAATP AIEKTISSAI TESFQRGLGD KAVNQLDRSV NSKIEATLTR HIQTQFQTSA
0901: IPVLQEALKS GLEASLIPSF ERLCKTMLEQ VDTALEKGIA EHTNAAQQRF EAGHSQLAHT LKETITSTSS VAQALSRALA ESQRNRSGVL TGGSDPSVTQ
1001: VSKGPVATLL EKVEAPMDPT AQLSRLVSEG KYEESFTSAL QRSDVSIVSW LCAQVDLHRL LAMNPLPLSQ GVLLSLLQQL ACDISKDTSR KLGWMTDVVT
1101: AINPSDQMIV VHARRIFEQV YQILHHQLNA PGSDVSAIRL IMHVLNSMLM GCK
0001: MASSPGPFLH NQYDQQHYAP PGISAQPSPV TQQQQDVSSS SAATNLHPQR TLSYPTPPLN LQSPRSNHNP GTHILALLNN TNNGAPVANQ EPSHQLPVVN
0101: HNEIARSFPG GSGPIRVPSC KLPKGRRLIG EHAVYDVDVR LQGEIQPQLE VTPITKYGSD PQLVVGRQIA VNKVYICYGL KGGNIRVLNI NTALRSLFRG
0201: HSQRVTDMAF FAEDVDMLAS VSLDGKVFVW KISEGSEGED QPQITGKIVL ALQILGEEDT KHPRVCWHCH KQEILVVSIG KHVLRIDTTK VGRGEVFSAE
0301: APLQCPLDKL IDGVQIVGKH DGEVTDLSMC QWMTTRLVSS SVDGTIKIWQ DRKAQPLVVL RPHDGHPVSS ATFVTSPERP DHIILITGGP LNREMKIWVS
0401: AGEEGWLLPA DAESWRCTQT LDLKSSTEPR AEEAFFNQVI ALSEAGLLLL ANAKRNALYA VHLDYGSSPV GTRMDYLSEF TVTMPILSFI GTNDPPEEPI
0501: VKVYCVQTLA IQQYTLDLCL CLPPPIENMG LEKSDSSVSR EANLVEGMSE PSGLKPTDLP SVDSVPKPSI IVNRSESANK LSFPSAEATS QAIVPPNGEP
0601: KTSGLPSQTS GAGSAYATLP QLPLSPRLSS KLSGYHTPVE AIEPVIPHHE LGGKTPSADY SVDRQMDAVG ERNLDVSSVE EISRSKDSNV TPDDDVSGMR
0701: SPSAFFKHPT HLVTPSEILM GVSSAEASIT TEDRRDRDAN IQDVNNDPRD TEVEVKEISE ARSTQNGEIN DHDETENCTS ENREKVFCSQ VSNLSTEMAR
0801: DCYPSTEGTF IPGESKAYGQ PIKAGDESGV DSRGGPAKLL KGKKQKAKNS QGPGLSSTSS NVANLADSFN EQSQSLSHPM TDLLPQLLAM QETMNQVMAS
0901: QKEMQRQLSN AATGPIGKES KRLEVALGRM IEKSSKSNAD ALWARIQEET VKNEKALRDH AQQIVNATTN FMSKELNAMF EKTIKKELAA IGPALARSVV
1001: PVIEKTVSSA ITESFQRGIG DKAVNQLDKS VNIKLEATVA RQIQAQFQTS GKQALQEGLR SSVESSVIPS FEKACKAMFD QIDSAFQKGI AEHTNAAQQR
1101: FDSGHSQLAH TLKESITSAS SVAQALSREL AETQRNLLAL AAAGANSGGS NSLVTQLSGG PLGALLEKVE APMDPTTELS RLISERKYEE SFTSALQRSD
1201: VSIVSWLCSQ VDLRGLLAMN PLPLSQGVLL SLLQQLACDI SKDTSRKLAW MTDVVAAINP SDQMIAVHAR PIFEQVYQIL HHHRNAPGSD VSAIRLIMHV
1301: INSMLMGCK
0101: HNEIARSFPG GSGPIRVPSC KLPKGRRLIG EHAVYDVDVR LQGEIQPQLE VTPITKYGSD PQLVVGRQIA VNKVYICYGL KGGNIRVLNI NTALRSLFRG
0201: HSQRVTDMAF FAEDVDMLAS VSLDGKVFVW KISEGSEGED QPQITGKIVL ALQILGEEDT KHPRVCWHCH KQEILVVSIG KHVLRIDTTK VGRGEVFSAE
0301: APLQCPLDKL IDGVQIVGKH DGEVTDLSMC QWMTTRLVSS SVDGTIKIWQ DRKAQPLVVL RPHDGHPVSS ATFVTSPERP DHIILITGGP LNREMKIWVS
0401: AGEEGWLLPA DAESWRCTQT LDLKSSTEPR AEEAFFNQVI ALSEAGLLLL ANAKRNALYA VHLDYGSSPV GTRMDYLSEF TVTMPILSFI GTNDPPEEPI
0501: VKVYCVQTLA IQQYTLDLCL CLPPPIENMG LEKSDSSVSR EANLVEGMSE PSGLKPTDLP SVDSVPKPSI IVNRSESANK LSFPSAEATS QAIVPPNGEP
0601: KTSGLPSQTS GAGSAYATLP QLPLSPRLSS KLSGYHTPVE AIEPVIPHHE LGGKTPSADY SVDRQMDAVG ERNLDVSSVE EISRSKDSNV TPDDDVSGMR
0701: SPSAFFKHPT HLVTPSEILM GVSSAEASIT TEDRRDRDAN IQDVNNDPRD TEVEVKEISE ARSTQNGEIN DHDETENCTS ENREKVFCSQ VSNLSTEMAR
0801: DCYPSTEGTF IPGESKAYGQ PIKAGDESGV DSRGGPAKLL KGKKQKAKNS QGPGLSSTSS NVANLADSFN EQSQSLSHPM TDLLPQLLAM QETMNQVMAS
0901: QKEMQRQLSN AATGPIGKES KRLEVALGRM IEKSSKSNAD ALWARIQEET VKNEKALRDH AQQIVNATTN FMSKELNAMF EKTIKKELAA IGPALARSVV
1001: PVIEKTVSSA ITESFQRGIG DKAVNQLDKS VNIKLEATVA RQIQAQFQTS GKQALQEGLR SSVESSVIPS FEKACKAMFD QIDSAFQKGI AEHTNAAQQR
1101: FDSGHSQLAH TLKESITSAS SVAQALSREL AETQRNLLAL AAAGANSGGS NSLVTQLSGG PLGALLEKVE APMDPTTELS RLISERKYEE SFTSALQRSD
1201: VSIVSWLCSQ VDLRGLLAMN PLPLSQGVLL SLLQQLACDI SKDTSRKLAW MTDVVAAINP SDQMIAVHAR PIFEQVYQIL HHHRNAPGSD VSAIRLIMHV
1301: INSMLMGCK
Arabidopsis Description
VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.