Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
22908117
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g071660.1.1 | Tomato | cytosol | 11.51 | 86.63 |
| Solyc07g021140.1.1 | Tomato | cytosol | 7.6 | 81.68 |
| Solyc12g062490.1.1 | Tomato | nucleus, plastid | 6.75 | 77.87 |
| Solyc02g005370.1.1 | Tomato | cytosol | 7.39 | 75.36 |
| Solyc10g005920.2.1 | Tomato | plastid | 72.42 | 71.86 |
| Solyc11g039850.1.1 | Tomato | cytosol | 5.19 | 70.19 |
| Solyc11g032180.1.1 | Tomato | cytosol | 4.55 | 69.57 |
| Solyc09g055300.1.1 | Tomato | cytosol | 4.34 | 68.54 |
| VIT_19s0015g01380.t01 | Wine grape | plastid | 62.69 | 62.95 |
| KRH46493 | Soybean | plastid | 57.21 | 59.81 |
| KRG98417 | Soybean | cytosol | 46.98 | 59.23 |
| AT3G13300.1 | Thale cress | cytosol | 53.23 | 55.73 |
| VIT_03s0091g01220.t01 | Wine grape | cytosol | 12.94 | 55.66 |
| CDY44010 | Canola | plastid | 48.83 | 55.45 |
| GSMUA_Achr3P10880_001 | Banana | plastid | 46.13 | 54.36 |
| GSMUA_Achr5P04250_001 | Banana | plastid | 46.98 | 54.05 |
| Bra034692.1-P | Field mustard | cytosol, plastid | 50.96 | 53.91 |
| Bra034693.1-P | Field mustard | cytosol | 44.14 | 53.86 |
| CDY23580 | Canola | plastid | 46.27 | 53.85 |
| AT3G13290.1 | Thale cress | cytosol | 51.24 | 53.81 |
| CDY23587 | Canola | plastid | 49.32 | 53.8 |
| GSMUA_Achr3P04200_001 | Banana | plastid | 45.7 | 52.75 |
| CDY44011 | Canola | plastid | 47.9 | 52.49 |
| GSMUA_Achr9P19760_001 | Banana | plastid | 48.47 | 51.32 |
| Zm00001d008821_P001 | Maize | extracellular | 5.05 | 50.0 |
| EES05610 | Sorghum | plastid | 45.63 | 48.02 |
| TraesCS7B01G127000.4 | Wheat | plastid | 44.49 | 47.86 |
| TraesCS7D01G221700.1 | Wheat | plastid | 43.57 | 47.82 |
| TraesCS7A01G220400.4 | Wheat | plastid | 44.35 | 47.74 |
| Os02t0722800-01 | Rice | plasma membrane | 45.34 | 47.65 |
| Zm00001d017883_P002 | Maize | plastid | 45.34 | 46.71 |
| Os06t0300800-01 | Rice | plasma membrane | 43.99 | 46.4 |
| TraesCS6A01G286100.3 | Wheat | golgi | 41.44 | 46.01 |
| Zm00001d048003_P001 | Maize | extracellular | 5.54 | 45.88 |
| HORVU7Hr1G045240.3 | Barley | plastid | 25.87 | 45.39 |
| TraesCS6D01G266500.2 | Wheat | cytosol, plastid | 42.5 | 45.27 |
| TraesCS6B01G314800.3 | Wheat | plastid | 43.0 | 44.62 |
| HORVU6Hr1G071910.3 | Barley | cytosol, nucleus, plastid | 43.14 | 43.73 |
| Zm00001d051678_P001 | Maize | cytosol | 42.93 | 43.55 |
| VIT_03s0091g01230.t01 | Wine grape | nucleus | 7.89 | 42.53 |
| Zm00001d002560_P001 | Maize | mitochondrion | 11.66 | 34.45 |
Protein Annotations
| Gene3D:1.10.220.100 | MapMan:16.8.2.2.4 | Gene3D:2.130.10.10 | InterPro:EDC4_WD40 | GO:GO:0000932 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0031087 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:K4CHS1 | PFAM:PF16529 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR15598 | PANTHER:PTHR15598:SF7 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc07g065950.2 |
| EnsemblPlants:Solyc07g065950.2.1 | UniParc:UPI000276B081 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7:+:67526040..67535688
Molecular Weight (calculated)
152033.0 Da
IEP (calculated)
5.852
GRAVY (calculated)
-0.321
Length
1407 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASSPGNPNQ PGGTGSGPFD IHKFFKPSTP TNPNPQNPII SSHYPSPNAS YPPPTPGAGA GVGGVYPYQT QTTTPFRHHP QFTHNLPQYS TPHDTQLMHQ
0101: QRSMSFPTPP LQPPPPTSSP HQFPNPNPGA TLMALLSPQP STSEVQIQST MPMPPIQPTS SGSELSDFSS GPNVGVAHSG PGPMRMPSSK LPKGRHLNGD
0201: HIVYDIDVRF PSEVQPQLEV TPITKYGSDP GLVLGRQIAV NKTYICYGLK LGAIRVLNIN TALRSLLKGL AQRVTDMAFF AEDVHLLASA SVDGRVYIWK
0301: ITEGPDEEEK PQITGRIVIA IHIVGEGESV HPRVCWHCHK QEILVVGIGK RILKIDTIKV GKGAVFSADE PLRCPVDKLV DGVQLIGTHD GEVTDLSMCQ
0401: WMTTRLVSAS VDGTIKIWDD RNPLPIAVLR PHDGHPVSSA TFLASPHHPD HVVLITGGPL NREIRIWALA GGEGILLQSD DESWRCTQTL ELKSSAEANV
0501: EEAFFNQVVA LSQAGLLLLA NAKKNAIYAV HLEYGPNPKA TRMDYIAGFT VTMPILSFTG TSGLLPHGEQ IVQVYCVQTQ AIQQYALDLS QCLPPPTESV
0601: VFERTESGVS RDSANIEGFA PVDPPGSKQQ EFPLSSSAPK SAVHDIGSEI SQTARYPTSA APTESTTSQE FASSIPETKS SILPSVTSDN DIASSASPPP
0701: LSPKLSRNLS GFRGPSNSFG ADTFDNDQVG NQKVVDYPVD PQKDGTPPIL SDIASLDDEH KTSGDDVPSG ISHLVKFKHP THLVTPSEIL MARSSSEVSI
0801: VNEQKSESEM NVLDAVTNND TRTVEMEVKV GGEAKFSQKT DMGSQDLHSF VSENKEKVFC SQVSDLGLEM ARECRTLSPE TYTVEESRQF DGVSGSEGPS
0901: QPSVTPEEDH DSAKDISEKD LDSTMSVTVH QPPAPSVKGK KQKGKNSQVS GPSSASPSAF NSTDSPNEAV VSSSTPSMES AFSQILSMRE MLNQVLTMQK
1001: ETQKQMEVMV AVPVTKEGRR LEAALGRSME KSVKANSDAL WARLQEESAK QEKSLRDRTQ QITNLISNCL NKDMPGLMEK LMKKELAAVG QAVARSITPA
1101: IEKTISSAIL EAFQKGVGDK AVNQLEKAVN SKLEATVARQ IQAQFQTSGK QALQETLKST LEVSVIPAFE MSCKAMFEQV NSTFQKGIAD HTVAAQQQFE
1201: SVHSPLAIAL RDAINSASAM TQTLSGELAD SQRQLLALAV SGANSQSANP LNHMNNGSLL HEKIETPPDP TKEISRQLGE HKYEEAFTAA LQMSDVSIVS
1301: WLCSQVDLAG ILSLNPLPLS QGVLLSLLQQ LSCGISSETV QKLSWMRDVL SAINPNDPLI VVHVRPIFEQ VYQMLVQRRN AATTPPAELS IIRLLVHVIN
1401: SMMMAVK
0101: QRSMSFPTPP LQPPPPTSSP HQFPNPNPGA TLMALLSPQP STSEVQIQST MPMPPIQPTS SGSELSDFSS GPNVGVAHSG PGPMRMPSSK LPKGRHLNGD
0201: HIVYDIDVRF PSEVQPQLEV TPITKYGSDP GLVLGRQIAV NKTYICYGLK LGAIRVLNIN TALRSLLKGL AQRVTDMAFF AEDVHLLASA SVDGRVYIWK
0301: ITEGPDEEEK PQITGRIVIA IHIVGEGESV HPRVCWHCHK QEILVVGIGK RILKIDTIKV GKGAVFSADE PLRCPVDKLV DGVQLIGTHD GEVTDLSMCQ
0401: WMTTRLVSAS VDGTIKIWDD RNPLPIAVLR PHDGHPVSSA TFLASPHHPD HVVLITGGPL NREIRIWALA GGEGILLQSD DESWRCTQTL ELKSSAEANV
0501: EEAFFNQVVA LSQAGLLLLA NAKKNAIYAV HLEYGPNPKA TRMDYIAGFT VTMPILSFTG TSGLLPHGEQ IVQVYCVQTQ AIQQYALDLS QCLPPPTESV
0601: VFERTESGVS RDSANIEGFA PVDPPGSKQQ EFPLSSSAPK SAVHDIGSEI SQTARYPTSA APTESTTSQE FASSIPETKS SILPSVTSDN DIASSASPPP
0701: LSPKLSRNLS GFRGPSNSFG ADTFDNDQVG NQKVVDYPVD PQKDGTPPIL SDIASLDDEH KTSGDDVPSG ISHLVKFKHP THLVTPSEIL MARSSSEVSI
0801: VNEQKSESEM NVLDAVTNND TRTVEMEVKV GGEAKFSQKT DMGSQDLHSF VSENKEKVFC SQVSDLGLEM ARECRTLSPE TYTVEESRQF DGVSGSEGPS
0901: QPSVTPEEDH DSAKDISEKD LDSTMSVTVH QPPAPSVKGK KQKGKNSQVS GPSSASPSAF NSTDSPNEAV VSSSTPSMES AFSQILSMRE MLNQVLTMQK
1001: ETQKQMEVMV AVPVTKEGRR LEAALGRSME KSVKANSDAL WARLQEESAK QEKSLRDRTQ QITNLISNCL NKDMPGLMEK LMKKELAAVG QAVARSITPA
1101: IEKTISSAIL EAFQKGVGDK AVNQLEKAVN SKLEATVARQ IQAQFQTSGK QALQETLKST LEVSVIPAFE MSCKAMFEQV NSTFQKGIAD HTVAAQQQFE
1201: SVHSPLAIAL RDAINSASAM TQTLSGELAD SQRQLLALAV SGANSQSANP LNHMNNGSLL HEKIETPPDP TKEISRQLGE HKYEEAFTAA LQMSDVSIVS
1301: WLCSQVDLAG ILSLNPLPLS QGVLLSLLQQ LSCGISSETV QKLSWMRDVL SAINPNDPLI VVHVRPIFEQ VYQMLVQRRN AATTPPAELS IIRLLVHVIN
1401: SMMMAVK
0001: MASSPGNTNP HNTPPFDLGI LFKPSSNPYP PPAASYPPPT GPFLHNQYDQ QHYAPPGISA QPSPVTQQQQ DVSSSSAATN LHPQRTLSYP TPPLNLQSPR
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK
Arabidopsis Description
VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.