CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034693.1-P	Field mustard	cytosol	89.25	99.39
CDY23580	Canola	plastid	90.58	96.2
CDY44010	Canola	plastid	73.83	76.51
CDY23587	Canola	plastid	75.31	74.96
AT3G13300.1	Thale cress	cytosol	74.77	71.43
AT3G13290.1	Thale cress	cytosol	73.05	70.0
Zm00001d008821_P001	Maize	extracellular	6.31	57.04
Zm00001d048003_P001	Maize	extracellular	6.78	51.18
KRH46493	Soybean	plastid	52.26	49.85
Solyc03g071660.1.1	Tomato	cytosol	7.24	49.73
KRG98417	Soybean	cytosol	42.91	49.37
VIT_19s0015g01380.t01	Wine grape	plastid	53.82	49.32
Solyc09g055300.1.1	Tomato	cytosol	3.35	48.31
Solyc07g065950.2.1	Tomato	plastid	52.49	47.9
GSMUA_Achr5P04250_001	Banana	plastid	45.48	47.75
GSMUA_Achr3P10880_001	Banana	plastid	44.16	47.49
GSMUA_Achr3P04200_001	Banana	plastid	44.47	46.84
Solyc10g005920.2.1	Tomato	plastid	51.4	46.54
VIT_03s0091g01220.t01	Wine grape	cytosol	11.53	45.26
Solyc07g021140.1.1	Tomato	cytosol	4.52	44.27
GSMUA_Achr9P19760_001	Banana	plastid	45.48	43.94
Os06t0300800-01	Rice	plasma membrane	45.41	43.7
TraesCS7A01G220400.4	Wheat	plastid	44.16	43.38
EES05610	Sorghum	plastid	45.17	43.38
TraesCS7D01G221700.1	Wheat	plastid	43.3	43.37
TraesCS7B01G127000.4	Wheat	plastid	44.16	43.35
Os02t0722800-01	Rice	plasma membrane	44.7	42.87
Zm00001d017883_P002	Maize	plastid	45.33	42.61
TraesCS6A01G286100.3	Wheat	golgi	41.04	41.59
TraesCS6D01G266500.2	Wheat	cytosol, plastid	42.06	40.88
HORVU7Hr1G045240.3	Barley	plastid	25.47	40.77
TraesCS6B01G314800.3	Wheat	plastid	42.6	40.34
HORVU6Hr1G071910.3	Barley	cytosol, nucleus, plastid	42.76	39.55
Zm00001d051678_P001	Maize	cytosol	42.45	39.29
Solyc12g062490.1.1	Tomato	nucleus, plastid	3.58	37.7
Zm00001d002560_P001	Maize	mitochondrion	13.55	36.55
Solyc02g005370.1.1	Tomato	cytosol	3.89	36.23
Solyc11g039850.1.1	Tomato	cytosol	2.88	35.58
VIT_03s0091g01230.t01	Wine grape	nucleus	6.15	30.27

Protein Annotations

Gene3D:1.10.220.100	MapMan:16.8.2.2.4	Gene3D:2.130.10.10	UniProt:A0A078I2J4	EnsemblPlants:CDY44011	ProteinID:CDY44011
ProteinID:CDY44011.1	InterPro:EDC4_WD40	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00079414001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF16529	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR15598	PANTHER:PTHR15598:SF7	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EED809	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaA05g26060DBnaA05g26060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2J4]

Coordinates

chrLK032576:-:177101..182488

Molecular Weight (calculated)

139241.0 Da

IEP (calculated)

5.927

GRAVY (calculated)

-0.365

Length

1284 amino acids

Sequence
(BLAST)

0001: MASSPGNTNP NNPPPFDLGT LFKPSSSPFP TPPASYPPPA GPFLHNEVAT SSSSSSPAAN LHQQQRTLSY PTPPVNLQSP RANHNPGTHL LALLNNSSNG
0101: AAAANQEPPP SSHHQETARS FPSGPIRVPS CKFPMGRRLT GEHAVYDVDV RLHGEIQPQL EVTPITKYGS DPQLVVGRQI AVSKVYICYG LKGGSIRVLN
0201: INTALRALFR GHSQRVTDMA FFAQDVHLLA SVSLDGKVFV WKISEGSEGD DDPQITGKIV LALQILGEED TKHPRVCWHS HKQEILVVSI GKHVLLIDTS
0301: KVGRGEVFSS ESPIQCHLDK LVDGVKIVGK HDGEVTDLSI CQWMTTRLVS SSVDGTVKIW KDFMAQPVAV LRPHDGYPVN SSTFVTSPER PDHIILITGG
0401: PLNREMKIWV PAGEEGWLLS AESESWNCTQ KLDLKSSTEP RAEMAFFNQI TALSEAGLLL LANAKRNAIY AVHLDYGSSP ADTRMDFLSE FTVTMPILSF
0501: IGTHDPSEEP IVKVYCVQTQ AIQQYTLDLC LCLPPSGEEN VGLEKSDSSV SREANLVDGM SEPSGLKPTE FPSVDSVPKP SILVNRSQGS ASGDTTAPAI
0601: VPSNSEPRTS GLLSDTNGGG SAYGTATQLP LSPRLSSKLS GYQTPVEAFE QVESRYELSG KAPSADYGVD KHTFEESSSS EEKNITPDDD ESGIRSSPSF
0701: FKHPTHLVKP SEFSMGVSSA EAPVATEDKS DRVSNDASGT EIEASEVGEV NYHEETMNGT SESREKIFYS QALNLSTEMA RDCYPSTDET KAYEQSVHAD
0801: DSLESRDVSA KIPELVSSSG LPQSAATNSK GKKQKAKSSQ NPNSSADSYN EKSQSLSHPL TDSLPQILAM QETMNQIMVS QKEMQRQLSN AVNGPVTKEG
0901: KRLEVAIGRM TERTSKSNAD ALLARFQEET VKSEKAMRDH SQHIVNATTN FMSKELNAVF EKTVKKEFAA IVPAIARAAT PAIEKTISSA ITESFQRGLG
1001: DKAVNQLDRS VNSKIEATLT RHIQTQFQTS AIPVLQEALK SGLEASLIPS FERLCKTMLE QVDTALEKGI AEHTNAAQQR FEAGHSQLAH TLKETITSTS
1101: SVAQALSRAL AESQRNRSGV LTGGSDPSVT QVSKGPVATL LEKVEAPMDP TAQLSRLVSE GKYEESFTSA LQRSDVSIVS WLCAQVDLHR LLAMNPLPLS
1201: QGVLLSLLQQ LACDISKDTS RKLGWMTDVV TAINPSDQMI VVHARRIFEQ VYQILHHQLN APGSDVSAIR LIMHVLNSML MGCK

Best Arabidopsis Sequence Match ( AT3G13300.1 )
(BLAST)

0001: MASSPGNTNP HNTPPFDLGI LFKPSSNPYP PPAASYPPPT GPFLHNQYDQ QHYAPPGISA QPSPVTQQQQ DVSSSSAATN LHPQRTLSYP TPPLNLQSPR
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK

Arabidopsis Description

VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.