Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G13290.1 | Thale cress | cytosol | 82.14 | 82.39 |
| CDY44010 | Canola | plastid | 72.54 | 78.69 |
| Bra034692.1-P | Field mustard | cytosol, plastid | 76.34 | 77.14 |
| CDY23587 | Canola | plastid | 73.44 | 76.51 |
| Bra034693.1-P | Field mustard | cytosol | 64.51 | 75.2 |
| CDY23580 | Canola | plastid | 67.34 | 74.86 |
| CDY44011 | Canola | plastid | 71.43 | 74.77 |
| Zm00001d008821_P001 | Maize | extracellular | 6.4 | 60.56 |
| Solyc03g071660.1.1 | Tomato | cytosol | 8.33 | 59.89 |
| Solyc09g055300.1.1 | Tomato | cytosol | 3.79 | 57.3 |
| VIT_19s0015g01380.t01 | Wine grape | plastid | 58.26 | 55.89 |
| KRG98417 | Soybean | cytosol | 46.35 | 55.82 |
| KRH46493 | Soybean | plastid | 55.73 | 55.65 |
| Zm00001d048003_P001 | Maize | extracellular | 6.85 | 54.12 |
| Solyc07g065950.2.1 | Tomato | plastid | 55.73 | 53.23 |
| Solyc07g021140.1.1 | Tomato | cytosol | 5.13 | 52.67 |
| Solyc10g005920.2.1 | Tomato | plastid | 54.76 | 51.9 |
| GSMUA_Achr3P10880_001 | Banana | plastid | 45.31 | 51.01 |
| GSMUA_Achr5P04250_001 | Banana | plastid | 46.21 | 50.78 |
| GSMUA_Achr3P04200_001 | Banana | plastid | 45.24 | 49.88 |
| Solyc12g062490.1.1 | Tomato | nucleus, plastid | 4.32 | 47.54 |
| GSMUA_Achr9P19760_001 | Banana | plastid | 46.88 | 47.4 |
| TraesCS7A01G220400.4 | Wheat | plastid | 45.91 | 47.21 |
| TraesCS7B01G127000.4 | Wheat | plastid | 45.91 | 47.17 |
| TraesCS7D01G221700.1 | Wheat | plastid | 44.94 | 47.11 |
| Solyc02g005370.1.1 | Tomato | cytosol | 4.84 | 47.1 |
| EES05610 | Sorghum | plastid | 46.65 | 46.9 |
| Os06t0300800-01 | Rice | plasma membrane | 46.35 | 46.7 |
| Solyc11g039850.1.1 | Tomato | cytosol | 3.57 | 46.15 |
| Os02t0722800-01 | Rice | plasma membrane | 45.98 | 46.15 |
| Zm00001d017883_P002 | Maize | plastid | 46.58 | 45.83 |
| VIT_03s0091g01220.t01 | Wine grape | cytosol | 10.86 | 44.65 |
| TraesCS6A01G286100.3 | Wheat | golgi | 41.96 | 44.51 |
| TraesCS6D01G266500.2 | Wheat | cytosol, plastid | 43.01 | 43.75 |
| HORVU7Hr1G045240.3 | Barley | plastid | 25.89 | 43.39 |
| TraesCS6B01G314800.3 | Wheat | plastid | 43.45 | 43.07 |
| Zm00001d051678_P001 | Maize | cytosol | 43.97 | 42.61 |
| HORVU6Hr1G071910.3 | Barley | cytosol, nucleus, plastid | 43.6 | 42.22 |
| Zm00001d002560_P001 | Maize | mitochondrion | 13.99 | 39.5 |
| VIT_03s0091g01230.t01 | Wine grape | nucleus | 7.07 | 36.4 |
Protein Annotations
| Gene3D:1.10.220.100 | MapMan:16.8.2.2.4 | Gene3D:2.130.10.10 | EntrezGene:820530 | ProteinID:AEE75330.1 | ProteinID:AEE75331.1 |
| EMBL:AK221240 | EMBL:AK230280 | ArrayExpress:AT3G13300 | EnsemblPlantsGene:AT3G13300 | RefSeq:AT3G13300 | TAIR:AT3G13300 |
| RefSeq:AT3G13300-TAIR-G | EnsemblPlants:AT3G13300.1 | TAIR:AT3G13300.1 | EMBL:AY128341 | Unigene:At.8098 | ProteinID:BAB02799.1 |
| ncoils:Coil | InterPro:EDC4_WD40 | GO:GO:0000003 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0006402 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009653 |
| GO:GO:0009719 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009965 | GO:GO:0009987 | GO:GO:0010071 |
| GO:GO:0010072 | GO:GO:0031087 | GO:GO:0042803 | GO:GO:0071365 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | RefSeq:NP_187938.2 | RefSeq:NP_850576.1 | PFAM:PF16529 | PO:PO:0000003 | PO:PO:0000005 |
| PO:PO:0000293 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR15598 | PANTHER:PTHR15598:SF7 | UniProt:Q9LTT8 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI00000A8617 | Symbol:VCS | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
Coordinates
chr3:+:4303825..4310275
Molecular Weight (calculated)
145729.0 Da
IEP (calculated)
6.007
GRAVY (calculated)
-0.362
Length
1344 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASSPGNTNP HNTPPFDLGI LFKPSSNPYP PPAASYPPPT GPFLHNQYDQ QHYAPPGISA QPSPVTQQQQ DVSSSSAATN LHPQRTLSYP TPPLNLQSPR
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.