Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G13300.1 | Thale cress | cytosol | 82.39 | 82.14 |
| CDY44010 | Canola | plastid | 70.3 | 76.03 |
| Bra034692.1-P | Field mustard | cytosol, plastid | 73.81 | 74.36 |
| Bra034693.1-P | Field mustard | cytosol | 63.96 | 74.33 |
| CDY23580 | Canola | plastid | 66.72 | 73.95 |
| CDY23587 | Canola | plastid | 71.04 | 73.8 |
| CDY44011 | Canola | plastid | 70.0 | 73.05 |
| Zm00001d008821_P001 | Maize | extracellular | 6.34 | 59.86 |
| Solyc03g071660.1.1 | Tomato | cytosol | 8.21 | 58.82 |
| Solyc09g055300.1.1 | Tomato | cytosol | 3.58 | 53.93 |
| VIT_19s0015g01380.t01 | Wine grape | plastid | 56.19 | 53.75 |
| KRG98417 | Soybean | cytosol | 44.7 | 53.67 |
| KRH46493 | Soybean | plastid | 53.88 | 53.64 |
| Zm00001d048003_P001 | Maize | extracellular | 6.72 | 52.94 |
| Solyc07g065950.2.1 | Tomato | plastid | 53.81 | 51.24 |
| Solyc07g021140.1.1 | Tomato | cytosol | 5.0 | 51.15 |
| GSMUA_Achr3P10880_001 | Banana | plastid | 45.37 | 50.92 |
| GSMUA_Achr5P04250_001 | Banana | plastid | 46.42 | 50.86 |
| GSMUA_Achr3P04200_001 | Banana | plastid | 45.45 | 49.96 |
| Solyc02g005370.1.1 | Tomato | cytosol | 5.07 | 49.28 |
| Solyc10g005920.2.1 | Tomato | plastid | 52.01 | 49.15 |
| GSMUA_Achr9P19760_001 | Banana | plastid | 46.49 | 46.88 |
| TraesCS7D01G221700.1 | Wheat | plastid | 44.18 | 46.18 |
| EES05610 | Sorghum | plastid | 46.04 | 46.15 |
| TraesCS7A01G220400.4 | Wheat | plastid | 45.0 | 46.14 |
| TraesCS7B01G127000.4 | Wheat | plastid | 45.0 | 46.1 |
| Os06t0300800-01 | Rice | plasma membrane | 45.45 | 45.65 |
| Os02t0722800-01 | Rice | plasma membrane | 45.6 | 45.63 |
| Zm00001d017883_P002 | Maize | plastid | 45.97 | 45.1 |
| Solyc12g062490.1.1 | Tomato | nucleus, plastid | 4.1 | 45.08 |
| TraesCS6A01G286100.3 | Wheat | golgi | 42.09 | 44.51 |
| TraesCS6D01G266500.2 | Wheat | cytosol, plastid | 43.13 | 43.75 |
| VIT_03s0091g01220.t01 | Wine grape | cytosol | 10.67 | 43.73 |
| TraesCS6B01G314800.3 | Wheat | plastid | 43.51 | 42.99 |
| HORVU7Hr1G045240.3 | Barley | plastid | 25.37 | 42.39 |
| Solyc11g039850.1.1 | Tomato | cytosol | 3.28 | 42.31 |
| HORVU6Hr1G071910.3 | Barley | cytosol, nucleus, plastid | 43.58 | 42.07 |
| Zm00001d051678_P001 | Maize | cytosol | 43.51 | 42.03 |
| Zm00001d002560_P001 | Maize | mitochondrion | 13.66 | 38.45 |
| VIT_03s0091g01230.t01 | Wine grape | nucleus | 7.16 | 36.78 |
Protein Annotations
| Gene3D:1.10.220.100 | MapMan:16.8.2.2.4 | Gene3D:2.130.10.10 | EntrezGene:820529 | ProteinID:AEE75329.1 | ArrayExpress:AT3G13290 |
| EnsemblPlantsGene:AT3G13290 | RefSeq:AT3G13290 | TAIR:AT3G13290 | RefSeq:AT3G13290-TAIR-G | EnsemblPlants:AT3G13290.1 | TAIR:AT3G13290.1 |
| Unigene:At.8097 | ProteinID:BAB02798.1 | ncoils:Coil | InterPro:EDC4_WD40 | GO:GO:0000932 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006402 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007186 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0031087 | GO:GO:0042803 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_187937.2 | PFAM:PF16529 | PO:PO:0000005 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR15598 | PANTHER:PTHR15598:SF7 | UniProt:Q9LTT9 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI00000A1574 | Symbol:VCR | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
VCRVaricose-related protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT9]
Coordinates
chr3:+:4297282..4303634
Molecular Weight (calculated)
145893.0 Da
IEP (calculated)
6.046
GRAVY (calculated)
-0.387
Length
1340 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASSPGNTNP HNPPPFDLGT IFKPSSNPYP PPTGPFLNNQ YNQQLYAPPG IAAQPSPVNQ TQQDVSSSSS ATNLQPQRTL SYPTPPLNPQ SPRVNHNPGT
0101: HILALLNNGG AVANQEPSHH NEIARAFPGG SGPIHVPSGK MPKGRRLVGE HAVYDVDVRL QGEIQPQLEV TPITKYGSDP QLVLGRQIAV NKVYICYGLK
0201: GGSIRVLNIN TALRSLFRGH SQRVTDMAFF AEDVHLLASV SLDGKVFVWK ISEGSEGDEQ SQITGKIVVA LQILGEEDTK HPRVCWHCHK QEILVVSIGK
0301: HVLRIDTTKV GRGEVFSAEA PLQCHLDKLI DGVQIVGKHD GEVTDLSMCQ WMTTRLVSSS VDGTVKIWQD RKTQPLVVLR PHDGLPVNSA IFVTSPERPD
0401: HIILITGGPL NREIKIWVSA GEEGWLLPAD TESWRCTQTL DLKSSTEPQA EKAFFNQVIA LSEAGLLLLA NARRNAIYSV HLDYGSSPVE TLMDYLSEFT
0501: VTMPILSFIG TNDHPEEPFV KVYCVQTLAI QQYTLDLFLC MPPPRENVGF EKSDSTVSRE ANLVESTLET SGMKPTELPS VGSVPKPSIL VNRSENANML
0601: SFPAGPASAG ITPPAIVPPN GEPKTSGMPS ETSDVDSAYA PSPQLPLSPR LSSKLSGYHT PVEAFEQVLP HHKLGGKTSS ADYFYVRQTD DVGGRNLDVS
0701: SVEENCRSKD TNVTPDDDVS GIRSPSAFFK QPTHLVTPSE ILMGVSSTEA SITTEDKRDR DANIEEVNND ARGLEVELKE VGEAQTSQNG EINYHETTEN
0801: HTSESRENIF CSQASNLSTE MARDRHPITE GSAIPGDSMA YGQPLQAGDE RGLDSRDVSA KLPESGSSSG LVATNSKGKK QKAKNSQGPG LSSTSSNVAN
0901: LADSFNEQSQ SLNHPMADLL PQLLALQETM TQVMASQKEM QRQLSNAVTG PIVKEGKKLE VALGRMIEKS SKSNADALWA HFQEEAVKNE KALRDHGQQI
1001: MNETTNFTSK ELNAMFEKTM KKEFASVGPT LARVVTPVIE KTVSSAITES FQRGIGDKAV NQLEKSVNSK LETTVARQIQ AQFQTSGRQV LQEGLRSSME
1101: SSVIPSFERS CKTMFEQVDS TLQKGIGKHT SATQQRIDSG QSQLAHTLRE TISSASSVTQ ALNRELAESQ RNRLALTAAG SNPLVTQLSN GPLGALLEKV
1201: EAPMDPTTEL SRLISERKYE ESFTSALQRS DVSIVSWLCS QVDLRGLLAM NPLPLSQGVL LSLLQQLACD ISTDTSRKLG WMTDVVTAIN PSDQMIAVHA
1301: RPIFEQVYQI LHHHRNAPGS DVSAVRLIMH VINSLLMSCK
0101: HILALLNNGG AVANQEPSHH NEIARAFPGG SGPIHVPSGK MPKGRRLVGE HAVYDVDVRL QGEIQPQLEV TPITKYGSDP QLVLGRQIAV NKVYICYGLK
0201: GGSIRVLNIN TALRSLFRGH SQRVTDMAFF AEDVHLLASV SLDGKVFVWK ISEGSEGDEQ SQITGKIVVA LQILGEEDTK HPRVCWHCHK QEILVVSIGK
0301: HVLRIDTTKV GRGEVFSAEA PLQCHLDKLI DGVQIVGKHD GEVTDLSMCQ WMTTRLVSSS VDGTVKIWQD RKTQPLVVLR PHDGLPVNSA IFVTSPERPD
0401: HIILITGGPL NREIKIWVSA GEEGWLLPAD TESWRCTQTL DLKSSTEPQA EKAFFNQVIA LSEAGLLLLA NARRNAIYSV HLDYGSSPVE TLMDYLSEFT
0501: VTMPILSFIG TNDHPEEPFV KVYCVQTLAI QQYTLDLFLC MPPPRENVGF EKSDSTVSRE ANLVESTLET SGMKPTELPS VGSVPKPSIL VNRSENANML
0601: SFPAGPASAG ITPPAIVPPN GEPKTSGMPS ETSDVDSAYA PSPQLPLSPR LSSKLSGYHT PVEAFEQVLP HHKLGGKTSS ADYFYVRQTD DVGGRNLDVS
0701: SVEENCRSKD TNVTPDDDVS GIRSPSAFFK QPTHLVTPSE ILMGVSSTEA SITTEDKRDR DANIEEVNND ARGLEVELKE VGEAQTSQNG EINYHETTEN
0801: HTSESRENIF CSQASNLSTE MARDRHPITE GSAIPGDSMA YGQPLQAGDE RGLDSRDVSA KLPESGSSSG LVATNSKGKK QKAKNSQGPG LSSTSSNVAN
0901: LADSFNEQSQ SLNHPMADLL PQLLALQETM TQVMASQKEM QRQLSNAVTG PIVKEGKKLE VALGRMIEKS SKSNADALWA HFQEEAVKNE KALRDHGQQI
1001: MNETTNFTSK ELNAMFEKTM KKEFASVGPT LARVVTPVIE KTVSSAITES FQRGIGDKAV NQLEKSVNSK LETTVARQIQ AQFQTSGRQV LQEGLRSSME
1101: SSVIPSFERS CKTMFEQVDS TLQKGIGKHT SATQQRIDSG QSQLAHTLRE TISSASSVTQ ALNRELAESQ RNRLALTAAG SNPLVTQLSN GPLGALLEKV
1201: EAPMDPTTEL SRLISERKYE ESFTSALQRS DVSIVSWLCS QVDLRGLLAM NPLPLSQGVL LSLLQQLACD ISTDTSRKLG WMTDVVTAIN PSDQMIAVHA
1301: RPIFEQVYQI LHHHRNAPGS DVSAVRLIMH VINSLLMSCK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.