Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G286100.3 | Wheat | golgi | 91.15 | 97.55 |
| TraesCS6D01G266500.2 | Wheat | cytosol, plastid | 94.17 | 96.67 |
| HORVU6Hr1G071910.3 | Barley | cytosol, nucleus, plastid | 92.26 | 90.13 |
| Os02t0722800-01 | Rice | plasma membrane | 74.19 | 75.13 |
| EES05610 | Sorghum | plastid | 74.04 | 75.09 |
| Zm00001d017883_P002 | Maize | plastid | 71.76 | 71.23 |
| Zm00001d051678_P001 | Maize | cytosol | 70.5 | 68.93 |
| TraesCS7B01G127000.4 | Wheat | plastid | 62.83 | 65.14 |
| GSMUA_Achr3P10880_001 | Banana | plastid | 49.85 | 56.62 |
| GSMUA_Achr3P04200_001 | Banana | plastid | 48.01 | 53.4 |
| Solyc03g071660.1.1 | Tomato | cytosol | 7.23 | 52.41 |
| GSMUA_Achr5P04250_001 | Banana | plastid | 47.05 | 52.17 |
| GSMUA_Achr9P19760_001 | Banana | plastid | 50.44 | 51.47 |
| Zm00001d008821_P001 | Maize | extracellular | 5.31 | 50.7 |
| Solyc09g055300.1.1 | Tomato | cytosol | 3.32 | 50.56 |
| Solyc07g021140.1.1 | Tomato | cytosol | 4.87 | 50.38 |
| KRH63269 | Soybean | cytosol | 5.9 | 50.0 |
| VIT_00s2472g00010.t01 | Wine grape | cytosol, peroxisome | 5.53 | 49.02 |
| VIT_00s0455g00020.t01 | Wine grape | plastid | 48.82 | 48.22 |
| Solyc11g032180.1.1 | Tomato | cytosol | 3.24 | 47.83 |
| VIT_19s0015g01380.t01 | Wine grape | plastid | 48.16 | 46.61 |
| VIT_00s1618g00010.t01 | Wine grape | cytosol | 13.2 | 46.13 |
| Zm00001d048003_P001 | Maize | extracellular | 5.75 | 45.88 |
| KRH46493 | Soybean | plastid | 45.43 | 45.77 |
| CDY44010 | Canola | plastid | 41.59 | 45.52 |
| KRG98417 | Soybean | cytosol | 37.32 | 45.34 |
| CDY23580 | Canola | plastid | 39.68 | 44.5 |
| Bra034693.1-P | Field mustard | cytosol | 37.68 | 44.32 |
| CDY23587 | Canola | plastid | 41.96 | 44.11 |
| KRH11647 | Soybean | endoplasmic reticulum | 45.5 | 43.91 |
| AT3G13290.1 | Thale cress | cytosol | 42.99 | 43.51 |
| KRH36660 | Soybean | endoplasmic reticulum | 45.13 | 43.5 |
| Bra034692.1-P | Field mustard | cytosol, plastid | 42.63 | 43.46 |
| AT3G13300.1 | Thale cress | cytosol | 43.07 | 43.45 |
| Zm00001d002560_P001 | Maize | mitochondrion | 15.12 | 43.07 |
| Solyc07g065950.2.1 | Tomato | plastid | 44.62 | 43.0 |
| Solyc02g005370.1.1 | Tomato | cytosol | 4.35 | 42.75 |
| Solyc12g062490.1.1 | Tomato | nucleus, plastid | 3.83 | 42.62 |
| CDY44011 | Canola | plastid | 40.34 | 42.6 |
| Solyc10g005920.2.1 | Tomato | plastid | 44.25 | 42.31 |
| Solyc11g039850.1.1 | Tomato | cytosol | 3.17 | 41.35 |
| KRH46495 | Soybean | cytosol | 18.58 | 40.91 |
| VIT_03s0091g01220.t01 | Wine grape | cytosol | 9.73 | 40.37 |
| VIT_03s0091g01230.t01 | Wine grape | nucleus | 5.53 | 28.74 |
Protein Annotations
| Gene3D:1.10.220.100 | MapMan:16.8.2.2.4 | Gene3D:2.130.10.10 | ncoils:Coil | InterPro:EDC4_WD40 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF16529 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR15598 | PANTHER:PTHR15598:SF6 | SMART:SM00320 | SUPFAM:SSF50978 |
| EnsemblPlantsGene:TraesCS6B01G314800 | EnsemblPlants:TraesCS6B01G314800.3 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:562592000..562600332
Molecular Weight (calculated)
145224.0 Da
IEP (calculated)
5.806
GRAVY (calculated)
-0.324
Length
1356 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASPAGNPNP NPGNPNPPFE MSMLFRPPPN PAPTAAPMFP GAAGPPPHSG PYSYPPATXX XXXXXXXXXX XXXXPMPRPV IPFPMPNPNA NPNPGANPMA
0101: AAGPNPGARL MQLLGSSGSG HLESAVSMPP PSSEFAAAQP SPLPAMPSAP PARMLSSTSS KVPRGRLLGG GDKAVHNVDS RLPGEAQPPQ LEVTPITKYT
0201: SDPGLVLGRQ IAVNRTYIVY GLKLGNIRVL NINTALRSLL RGHTQRVTDM AFFAEDVHRL ASASVDGRIY VWRIDEGPDA ENKPQITGKI EVAIQIVGDA
0301: EAYHPRICWH SHKQELLFVG IRNCVLRIDT TKVGRGRDFN AEEPIKCHLD ELIDGVRLVG RHDGDVTDLS ISQWMTTRLA SGSNDGTVKI WDDRKLAPLS
0401: ILKPHDGQAV YSVAFLTAPE RPHHINLITA GPLNREIKIW ASTNEEGWLL PSDSETWNCT QTLELVSSLE PKVEEAFFNQ VAVLPQASII LLANAKKNAI
0501: YAVHVEYGSD PASTRLDYIA DFTVAMPILS LTGTHVSQPD GEQVVQVYCV QTMAIQQYGL ELSLCSPPTS DTTSFGRDPV VSRVYDTPLE VVGAESSTGT
0601: SFTDSYTVGT SSKQSTFDQT AEFDLKPSAP PLTYTEGDGS AHLQSAPLAS NTDLTGSGPS VGNRDKDQSA FDYSTSRITE PVALTRQDTP MPKPVALARQ
0701: DTPMPKPVAL ARQDTPMPKD NFGKDELRDS HSDVQMLPNP RMMFKVGGNA THLITPSEII SGALSAESNQ VSKSDGAKIQ DDSISSPRIA EVEAKHVDES
0801: KSNHALELEA VKEAQVVREN SEKDQNSLEQ TVEMISERSV TTDKYSVEES RSPSDRLVPD HTGAAGENVS NKTVEKPGIS DSSVSREQSS SYTKDKVFHP
0901: QASGQSSPST SAFNSTESSH EPVSSAYPPI ESSSEVADML QQLIAMQKDM QKQLGTIVIA PIAKEGKRIE TSLGRTMEKS IKASIDALWA RFLEENTKRE
1001: KAERERMQQM TTLITSSINK DLPAMLDKLV KKEVSSLGPV VARAMTPIIE KFLTSIVADA VQKAVGDKVV NQLDKSVTAK LEATLARQIQ MQFHTSVKQT
1101: LQDVLRTSFE SLLVPAFEQS CKTMFEQVDS AFQKGMSEHA VAIQQQVEAA HTPLALTLKE TITSASSITQ NLTSELLDGH RKLLALVTSG NANAQNTNVL
1201: QPNNGPITGP PEVEAPLDPM KELGRLLAEH KFDEAFTVAL QRSDVSIVSW LCSQVDLRGL CTMAPVPLNQ GVLLALLQQL AVDIGTETSR KIQWMTDVAM
1301: AINPTDQVIA IHVRPIFEQV YAKLAHHRSL PTTSPLDNSN LRLLMHVINS VLLSYK
0101: AAGPNPGARL MQLLGSSGSG HLESAVSMPP PSSEFAAAQP SPLPAMPSAP PARMLSSTSS KVPRGRLLGG GDKAVHNVDS RLPGEAQPPQ LEVTPITKYT
0201: SDPGLVLGRQ IAVNRTYIVY GLKLGNIRVL NINTALRSLL RGHTQRVTDM AFFAEDVHRL ASASVDGRIY VWRIDEGPDA ENKPQITGKI EVAIQIVGDA
0301: EAYHPRICWH SHKQELLFVG IRNCVLRIDT TKVGRGRDFN AEEPIKCHLD ELIDGVRLVG RHDGDVTDLS ISQWMTTRLA SGSNDGTVKI WDDRKLAPLS
0401: ILKPHDGQAV YSVAFLTAPE RPHHINLITA GPLNREIKIW ASTNEEGWLL PSDSETWNCT QTLELVSSLE PKVEEAFFNQ VAVLPQASII LLANAKKNAI
0501: YAVHVEYGSD PASTRLDYIA DFTVAMPILS LTGTHVSQPD GEQVVQVYCV QTMAIQQYGL ELSLCSPPTS DTTSFGRDPV VSRVYDTPLE VVGAESSTGT
0601: SFTDSYTVGT SSKQSTFDQT AEFDLKPSAP PLTYTEGDGS AHLQSAPLAS NTDLTGSGPS VGNRDKDQSA FDYSTSRITE PVALTRQDTP MPKPVALARQ
0701: DTPMPKPVAL ARQDTPMPKD NFGKDELRDS HSDVQMLPNP RMMFKVGGNA THLITPSEII SGALSAESNQ VSKSDGAKIQ DDSISSPRIA EVEAKHVDES
0801: KSNHALELEA VKEAQVVREN SEKDQNSLEQ TVEMISERSV TTDKYSVEES RSPSDRLVPD HTGAAGENVS NKTVEKPGIS DSSVSREQSS SYTKDKVFHP
0901: QASGQSSPST SAFNSTESSH EPVSSAYPPI ESSSEVADML QQLIAMQKDM QKQLGTIVIA PIAKEGKRIE TSLGRTMEKS IKASIDALWA RFLEENTKRE
1001: KAERERMQQM TTLITSSINK DLPAMLDKLV KKEVSSLGPV VARAMTPIIE KFLTSIVADA VQKAVGDKVV NQLDKSVTAK LEATLARQIQ MQFHTSVKQT
1101: LQDVLRTSFE SLLVPAFEQS CKTMFEQVDS AFQKGMSEHA VAIQQQVEAA HTPLALTLKE TITSASSITQ NLTSELLDGH RKLLALVTSG NANAQNTNVL
1201: QPNNGPITGP PEVEAPLDPM KELGRLLAEH KFDEAFTVAL QRSDVSIVSW LCSQVDLRGL CTMAPVPLNQ GVLLALLQQL AVDIGTETSR KIQWMTDVAM
1301: AINPTDQVIA IHVRPIFEQV YAKLAHHRSL PTTSPLDNSN LRLLMHVINS VLLSYK
0001: MASSPGNTNP HNTPPFDLGI LFKPSSNPYP PPAASYPPPT GPFLHNQYDQ QHYAPPGISA QPSPVTQQQQ DVSSSSAATN LHPQRTLSYP TPPLNLQSPR
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK
Arabidopsis Description
VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.