CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98417	Soybean	cytosol	78.38	94.53
KRH46495	Soybean	cytosol	30.16	65.91
VIT_19s0015g01380.t01	Wine grape	plastid	65.53	62.95
KRH63269	Soybean	cytosol	6.91	58.12
Solyc03g071660.1.1	Tomato	cytosol	8.02	57.75
Solyc07g065950.2.1	Tomato	plastid	59.81	57.21
Solyc10g005920.2.1	Tomato	plastid	59.73	56.7
AT3G13300.1	Thale cress	cytosol	55.65	55.73
Zm00001d008821_P001	Maize	extracellular	5.87	55.63
CDY44010	Canola	plastid	50.89	55.29
GSMUA_Achr5P04250_001	Banana	plastid	50.15	55.19
GSMUA_Achr3P10880_001	Banana	plastid	48.74	54.94
VIT_03s0091g01220.t01	Wine grape	cytosol	13.3	54.74
Bra034693.1-P	Field mustard	cytosol	46.81	54.64
CDY23580	Canola	plastid	48.51	54.01
AT3G13290.1	Thale cress	cytosol	53.64	53.88
CDY23587	Canola	plastid	51.34	53.57
Bra034692.1-P	Field mustard	cytosol, plastid	52.75	53.38
KRH36660	Soybean	endoplasmic reticulum	55.57	53.16
GSMUA_Achr3P04200_001	Banana	plastid	48.07	53.08
KRH11647	Soybean	endoplasmic reticulum	55.35	53.02
Solyc09g055300.1.1	Tomato	cytosol	3.49	52.81
CDY44011	Canola	plastid	49.85	52.26
Zm00001d048003_P001	Maize	extracellular	6.54	51.76
Solyc07g021140.1.1	Tomato	cytosol	4.98	51.15
GSMUA_Achr9P19760_001	Banana	plastid	50.37	51.02
VIT_03s0091g01230.t01	Wine grape	nucleus	9.58	49.43
TraesCS7A01G220400.4	Wheat	plastid	47.7	49.12
TraesCS7B01G127000.4	Wheat	plastid	47.62	49.01
TraesCS7D01G221700.1	Wheat	plastid	46.58	48.91
EES05610	Sorghum	plastid	48.44	48.77
Solyc02g005370.1.1	Tomato	cytosol	4.98	48.55
Os02t0722800-01	Rice	plasma membrane	48.29	48.54
Os06t0300800-01	Rice	plasma membrane	48.07	48.5
Solyc12g062490.1.1	Tomato	nucleus, plastid	4.38	48.36
Zm00001d017883_P002	Maize	plastid	48.81	48.1
TraesCS6A01G286100.3	Wheat	golgi	44.28	47.04
TraesCS6D01G266500.2	Wheat	cytosol, plastid	45.1	45.95
HORVU7Hr1G045240.3	Barley	plastid	27.12	45.51
TraesCS6B01G314800.3	Wheat	plastid	45.77	45.43
HORVU6Hr1G071910.3	Barley	cytosol, nucleus, plastid	46.29	44.88
Zm00001d051678_P001	Maize	cytosol	46.21	44.84
Solyc11g039850.1.1	Tomato	cytosol	3.42	44.23
Zm00001d002560_P001	Maize	mitochondrion	14.34	40.55

Protein Annotations

Gene3D:1.10.220.100	EntrezGene:100798228	MapMan:16.8.2.2.4	Gene3D:2.130.10.10	UniProt:A0A0R0IW79	EMBL:ACUP02005347
InterPro:EDC4_WD40	EnsemblPlantsGene:GLYMA_08G337200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH46493	ProteinID:KRH46493	ProteinID:KRH46493.1	PFAM:PF16529
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR15598	PANTHER:PTHR15598:SF7	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0006EDA1A4	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:45408963..45417738

Molecular Weight (calculated)

146286.0 Da

IEP (calculated)

5.755

GRAVY (calculated)

-0.332

Length

1346 amino acids

Sequence
(BLAST)

0001: MASPNNHNPP PPTIPFDMHS FFNPQPPPPP SSNPNPNPNH NPSSSYPPPF HFPNFDLPLP PHPHHRSISF PTQPIPPPSN PNAGARLMAL LGNPSPAPPQ
0101: PPPPEFVPVS SSAVLAAASA AAAALTRLPS SKVPKGRHLA GELVTYDVDV RLPGEVQPQL EVAPITKYGS DPNPVLGRQI AVNKSYICYG LKQGNIRVLN
0201: IHTAVRSLLR GHTQRVTDLA FFAEDVHLLA SVGTDGRVYV WKITEGPDDE DKPQITANIV IAVQIVGEEK VEHPQICWHC HKQEILIVGM GKHVLRIDTT
0301: KVGNGEAFVV DDPLRCPVDK LIDGVQLVGT HDGEVTDLSM CQWMTNRLVS ASQDGTIKIW EDRKTQPLAI LRPHDGNPVF SATFFTAPHQ PDHIVLITAG
0401: PQNREVKLWV SASDEGWLLP SDTESWKCTQ TLELKSSAQP SKDAFFNQVA ALSHAGLLLL ANAQRNAIYA VHLEYGSNPE STRMDYIAEF TVTMPILSFT
0501: GTSDILPHGE HIVQVYCVQT QAIQQYALDL AQCLPPPYEN VGLEKSDSSV SRDPITVEGF HSLDSSAGRT TEMSLASSAP KTMLQTSSNE GGLVARYPLS
0601: SGHVEAPISR GISSSNTEAK PATLPPSSSD ADIVCIPSSP LPLSPRLSRK LSDIRSPQSN LSDHVGDHPV NDYSIDRQMD TIHRNLSDPL NSDSKNDEKK
0701: MKQDDISSVL NPSVLFKQPT HLITPSEITK AGSSSETNII DRKNEGEAKI QDVVDVGNAE VEVKVVGETR SNQSDEFGGQ GSQQPSVADS KEKLFCSQAS
0801: DLGIEMAREC CSISEDTYLM EEPGQLDSTT GGDSLAQPLD ASEDGLQDFA KDAHEKVSDS STSVAVPPSP APNAKGKRQK GKNSQPAGPS SSFPSACNST
0901: DSFNEPIGNS SLPSAENAFP QILAMQESLN QLLTMQKEMQ KQMTMMVAVP VTKEGRRLEA ALGRNMEKAV KSNSDALWAR IQEENAKSEK LLRDRIQQVT
1001: GLISNFMNKD LPVILEKTVK KEMASVGQAV VRAMSPAVEK IISSSIVESF QRGVGDKAVN QLDRSVNSKL EATVARQIQA QFQTTGKQVL QEALKSSFET
1101: SVVPAFEMSC KAMFEQVDAT FQKGMVEHST AVQQRLESAP TSLAMTLRDS INSASSITQT LSREVLEGQR KLVTLAATRT NSGTLNTLPV QLNNGPLLHE
1201: KVEVPLDPTQ ELARLISERK YEEAFIGALH RSDVSIVSWL CTQQVDLHGL LSMVPLPLSQ GVLLSLLQQL ACDINNDTPR KIAWLTDVAA AINPSDLTIA
1301: MHTRSIFEQV YQILNHQRSL PTMTGADLSS IRLLLHVINS MLMTCK

Best Arabidopsis Sequence Match ( AT3G13300.2 )
(BLAST)

0001: MASSPGPFLH NQYDQQHYAP PGISAQPSPV TQQQQDVSSS SAATNLHPQR TLSYPTPPLN LQSPRSNHNP GTHILALLNN TNNGAPVANQ EPSHQLPVVN
0101: HNEIARSFPG GSGPIRVPSC KLPKGRRLIG EHAVYDVDVR LQGEIQPQLE VTPITKYGSD PQLVVGRQIA VNKVYICYGL KGGNIRVLNI NTALRSLFRG
0201: HSQRVTDMAF FAEDVDMLAS VSLDGKVFVW KISEGSEGED QPQITGKIVL ALQILGEEDT KHPRVCWHCH KQEILVVSIG KHVLRIDTTK VGRGEVFSAE
0301: APLQCPLDKL IDGVQIVGKH DGEVTDLSMC QWMTTRLVSS SVDGTIKIWQ DRKAQPLVVL RPHDGHPVSS ATFVTSPERP DHIILITGGP LNREMKIWVS
0401: AGEEGWLLPA DAESWRCTQT LDLKSSTEPR AEEAFFNQVI ALSEAGLLLL ANAKRNALYA VHLDYGSSPV GTRMDYLSEF TVTMPILSFI GTNDPPEEPI
0501: VKVYCVQTLA IQQYTLDLCL CLPPPIENMG LEKSDSSVSR EANLVEGMSE PSGLKPTDLP SVDSVPKPSI IVNRSESANK LSFPSAEATS QAIVPPNGEP
0601: KTSGLPSQTS GAGSAYATLP QLPLSPRLSS KLSGYHTPVE AIEPVIPHHE LGGKTPSADY SVDRQMDAVG ERNLDVSSVE EISRSKDSNV TPDDDVSGMR
0701: SPSAFFKHPT HLVTPSEILM GVSSAEASIT TEDRRDRDAN IQDVNNDPRD TEVEVKEISE ARSTQNGEIN DHDETENCTS ENREKVFCSQ VSNLSTEMAR
0801: DCYPSTEGTF IPGESKAYGQ PIKAGDESGV DSRGGPAKLL KGKKQKAKNS QGPGLSSTSS NVANLADSFN EQSQSLSHPM TDLLPQLLAM QETMNQVMAS
0901: QKEMQRQLSN AATGPIGKES KRLEVALGRM IEKSSKSNAD ALWARIQEET VKNEKALRDH AQQIVNATTN FMSKELNAMF EKTIKKELAA IGPALARSVV
1001: PVIEKTVSSA ITESFQRGIG DKAVNQLDKS VNIKLEATVA RQIQAQFQTS GKQALQEGLR SSVESSVIPS FEKACKAMFD QIDSAFQKGI AEHTNAAQQR
1101: FDSGHSQLAH TLKESITSAS SVAQALSREL AETQRNLLAL AAAGANSGGS NSLVTQLSGG PLGALLEKVE APMDPTTELS RLISERKYEE SFTSALQRSD
1201: VSIVSWLCSQ VDLRGLLAMN PLPLSQGVLL SLLQQLACDI SKDTSRKLAW MTDVVAAINP SDQMIAVHAR PIFEQVYQIL HHHRNAPGSD VSAIRLIMHV
1301: INSMLMGCK

Arabidopsis Description

VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.