CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23587	Canola	plastid	95.24	91.47
Bra034692.1-P	Field mustard	cytosol, plastid	97.82	91.13
CDY23580	Canola	plastid	72.72	74.52
CDY44011	Canola	plastid	76.51	73.83
AT3G13300.1	Thale cress	cytosol	78.69	72.54
AT3G13290.1	Thale cress	cytosol	76.03	70.3
Zm00001d008821_P001	Maize	extracellular	6.62	57.75
Solyc03g071660.1.1	Tomato	cytosol	8.56	56.68
Solyc09g055300.1.1	Tomato	cytosol	3.95	55.06
Solyc07g021140.1.1	Tomato	cytosol	5.57	52.67
Zm00001d048003_P001	Maize	extracellular	7.1	51.76
KRG98417	Soybean	cytosol	46.33	51.43
VIT_19s0015g01380.t01	Wine grape	plastid	57.79	51.11
KRH46493	Soybean	plastid	55.29	50.89
GSMUA_Achr5P04250_001	Banana	plastid	48.51	49.14
Solyc07g065950.2.1	Tomato	plastid	55.45	48.83
GSMUA_Achr3P04200_001	Banana	plastid	47.54	48.32
GSMUA_Achr3P10880_001	Banana	plastid	46.49	48.24
Solyc10g005920.2.1	Tomato	plastid	54.88	47.95
Solyc02g005370.1.1	Tomato	cytosol	5.17	46.38
Solyc12g062490.1.1	Tomato	nucleus, plastid	4.52	45.9
EES05610	Sorghum	plastid	49.23	45.62
GSMUA_Achr9P19760_001	Banana	plastid	48.59	45.3
Solyc11g039850.1.1	Tomato	cytosol	3.79	45.19
Zm00001d017883_P002	Maize	plastid	49.31	44.73
Os02t0722800-01	Rice	plasma membrane	48.1	44.51
Os06t0300800-01	Rice	plasma membrane	47.78	44.38
TraesCS7B01G127000.4	Wheat	plastid	46.73	44.27
TraesCS7D01G221700.1	Wheat	plastid	45.76	44.23
TraesCS7A01G220400.4	Wheat	plastid	46.65	44.22
TraesCS6A01G286100.3	Wheat	golgi	44.39	43.41
TraesCS6D01G266500.2	Wheat	cytosol, plastid	45.12	42.32
Zm00001d051678_P001	Maize	cytosol	46.65	41.67
TraesCS6B01G314800.3	Wheat	plastid	45.52	41.59
VIT_03s0091g01220.t01	Wine grape	cytosol	10.9	41.28
HORVU7Hr1G045240.3	Barley	plastid	26.47	40.9
HORVU6Hr1G071910.3	Barley	cytosol, nucleus, plastid	45.6	40.71
Zm00001d002560_P001	Maize	mitochondrion	15.25	39.71
VIT_03s0091g01230.t01	Wine grape	nucleus	6.21	29.5

Protein Annotations

Gene3D:1.10.220.100	MapMan:16.8.2.2.4	Gene3D:2.130.10.10	UniProt:A0A078HZI0	EnsemblPlants:CDY44010	ProteinID:CDY44010
ProteinID:CDY44010.1	InterPro:EDC4_WD40	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00079411001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF16529	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR15598	PANTHER:PTHR15598:SF7	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE19B4	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaA05g26050DBnaA05g26050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZI0]

Coordinates

chrLK032576:-:166443..172500

Molecular Weight (calculated)

134912.0 Da

IEP (calculated)

5.983

GRAVY (calculated)

-0.384

Length

1239 amino acids

Sequence
(BLAST)

0001: MASSPGNTNP NNPPPPFPTP PASYPPPAGP FLQQPYAPPP PQEAAPSSSS SLLQQQRSLP FPSPPLNLLH TPANHNPGTH ILALLNNNNN GGVTNQDPPP
0101: PQQHQAPEIR SFPSGPLRVP SCKLPRGRRL SGEHAVYDVD VRLHGEIQPQ LEVTPITKYG SDPQLVVGRQ IAVNKIYICY GLKGGNIRVL NINTALRALF
0201: RGHSQRVTDM AFFAHDVHLL ASVSLDGKVF VWKISEGSEG DDDPQITGKI VLALQILGEE DTKHPRVCWH SHKQEILVVS IGKHVLLVDT TKVGRGEVFS
0301: SESPIQCHLD KLVDGVKIVG KHDGEVTDLS MCQWMITRLV SSSVDGTVKI WQDFKAQPVA VLRPHDGHPV NSATFVTSPE RSDHVILITG GPLNREMKIW
0401: VPTGEEGWLL PAESESWNCT QKLDLKSSTE PRAEMAFFNQ VIALSEAGLL LLANAKRNAI YAVHLDYGSS PADTRMDYLS EFTVTMPILS FIGTNDPPEE
0501: AVVKVYCVQT QAIQQYTLDL SLCLPPPIEE NVGLEKSDSS VSREANLVEA ISKPSGMKLT DLPSVDSVPK PSILVNRSKG ANTSTYPAGS ASTSAAGSTY
0601: ATSPQLPLSP RLSSTLSGHQ TPVDESSRSK DNDVTPDDDV SGMRTAQAFF KHPTHLVTPS EFLMRVPSTE ASITTDDKRD RDANIQDVNI DSRDTEVEVK
0701: EVGESSSTQN GEINYSDETE HRTSVNTEKT FYSQTTNLST EMARDCYPGT ELEESKAYEQ SVQAGDNLDS RDVSGKLPES VSSIGLSHSQ GPGLSSTSSN
0801: VANLADTYNE QTQSSSQPIL ALQETMNQMM VSQKEMQRQL SNAVNGPVTK EGKRLEVALG RMIERSSKSN ADALWARLQE EIVKNEKAMR DNSQQIVNAV
0901: TNFMSKELNA LFEKTIKKEF ATMIPALARA LSPAIEKTVS SSVTESFQRG LGDKAVNQLD KSVNSKLEAT ITKQIQTQFQ TSGRQALQEA LRSGLEASLI
1001: PSFERSCKTM FEQVDAAFQK GMAEHTNAAQ QRFDAGHSQL AHTLKETITS ASSVTQALSR ELAESQRNRL ALAAAGANSS GSNTLVSQRS SGPLGALLEK
1101: VEADPITELS RLISERKYEE SFTSALQRSD VSIVSWLCSQ VDLRGLLAMN PLPLSQGVLL SLLQQLACDI SKDSSRKLAW MTDVVAAINP SDPMVAVHGR
1201: PIFEQVYQIL HHHRNAPGSD VSATRLIMHV INSMLMACK

Best Arabidopsis Sequence Match ( AT3G13300.1 )
(BLAST)

0001: MASSPGNTNP HNTPPFDLGI LFKPSSNPYP PPAASYPPPT GPFLHNQYDQ QHYAPPGISA QPSPVTQQQQ DVSSSSAATN LHPQRTLSYP TPPLNLQSPR
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK

Arabidopsis Description

VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.