Factsheet for Solyc07g021140.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g062490.1.1	Tomato	nucleus, plastid	77.86	83.61
Solyc11g039850.1.1	Tomato	cytosol	51.15	64.42
Solyc02g005370.1.1	Tomato	cytosol	56.49	53.62
Solyc03g071660.1.1	Tomato	cytosol	74.81	52.41
Solyc11g032180.1.1	Tomato	cytosol	22.14	31.52
Solyc09g055300.1.1	Tomato	cytosol	20.61	30.34
Zm00001d002560_P001	Maize	mitochondrion	46.56	12.82
Zm00001d008821_P001	Maize	extracellular	10.69	9.86
VIT_03s0091g01220.t01	Wine grape	cytosol	24.43	9.79
Zm00001d048003_P001	Maize	extracellular	12.21	9.41
Solyc07g065950.2.1	Tomato	plastid	81.68	7.6
KRG98417	Soybean	cytosol	51.15	6.0
Solyc10g005920.2.1	Tomato	plastid	63.36	5.85
VIT_19s0015g01380.t01	Wine grape	plastid	61.07	5.71
GSMUA_Achr3P10880_001	Banana	plastid	51.91	5.7
CDY44010	Canola	plastid	52.67	5.57
GSMUA_Achr5P04250_001	Banana	plastid	51.15	5.48
GSMUA_Achr3P04200_001	Banana	plastid	48.85	5.25
CDY23587	Canola	plastid	51.15	5.19
Bra034692.1-P	Field mustard	cytosol, plastid	52.67	5.19
AT3G13300.1	Thale cress	cytosol	52.67	5.13
Bra034693.1-P	Field mustard	cytosol	44.27	5.03
AT3G13290.1	Thale cress	cytosol	51.15	5.0
TraesCS7D01G221700.1	Wheat	plastid	48.85	4.99
KRH46493	Soybean	plastid	51.15	4.98
TraesCS6A01G286100.3	Wheat	golgi	48.09	4.97
CDY23580	Canola	plastid	45.8	4.96
TraesCS6D01G266500.2	Wheat	cytosol, plastid	49.62	4.92
TraesCS7A01G220400.4	Wheat	plastid	48.85	4.9
TraesCS7B01G127000.4	Wheat	plastid	48.85	4.89
TraesCS6B01G314800.3	Wheat	plastid	50.38	4.87
GSMUA_Achr9P19760_001	Banana	plastid	48.85	4.82
Os02t0722800-01	Rice	plasma membrane	48.09	4.71
HORVU6Hr1G071910.3	Barley	cytosol, nucleus, plastid	49.62	4.68
EES05610	Sorghum	plastid	47.33	4.64
Os06t0300800-01	Rice	plasma membrane	46.56	4.57
CDY44011	Canola	plastid	44.27	4.52
Zm00001d017883_P002	Maize	plastid	46.56	4.47
Zm00001d051678_P001	Maize	cytosol	46.56	4.4
VIT_03s0091g01230.t01	Wine grape	nucleus	1.53	0.77
HORVU7Hr1G045240.3	Barley	plastid	2.29	0.37

Protein Annotations

EnsemblPlants:Solyc07g021140.1.1	EnsemblPlantsGene:Solyc07g021140.1	GO:GO:0000932	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0031087	PANTHER:PTHR15598	PANTHER:PTHR15598:SF7	UniParc:UPI000276C7CC	UniProt:K4CCX3	MapMan:35.1

Description

No Description!

Coordinates

chr7:+:16338162..16338557

Molecular Weight (calculated)

14498.1 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.374

Length

131 amino acids

Sequence
(BLAST)

001: MSCKAMFEKV NSIFQKGIAD HTIAAQQQFE SVHSPLASAL RYAINSASLM TQTLSREFAD SHRQLLALGV SGENSQSTNP LSNINNGSLL HEKIESLPNP
101: TKDISKQLGE HKYKEAFTEA LQMNDVSIFS W

Best Arabidopsis Sequence Match ( AT3G13300.2 )
(BLAST)

0001: MASSPGPFLH NQYDQQHYAP PGISAQPSPV TQQQQDVSSS SAATNLHPQR TLSYPTPPLN LQSPRSNHNP GTHILALLNN TNNGAPVANQ EPSHQLPVVN
0101: HNEIARSFPG GSGPIRVPSC KLPKGRRLIG EHAVYDVDVR LQGEIQPQLE VTPITKYGSD PQLVVGRQIA VNKVYICYGL KGGNIRVLNI NTALRSLFRG
0201: HSQRVTDMAF FAEDVDMLAS VSLDGKVFVW KISEGSEGED QPQITGKIVL ALQILGEEDT KHPRVCWHCH KQEILVVSIG KHVLRIDTTK VGRGEVFSAE
0301: APLQCPLDKL IDGVQIVGKH DGEVTDLSMC QWMTTRLVSS SVDGTIKIWQ DRKAQPLVVL RPHDGHPVSS ATFVTSPERP DHIILITGGP LNREMKIWVS
0401: AGEEGWLLPA DAESWRCTQT LDLKSSTEPR AEEAFFNQVI ALSEAGLLLL ANAKRNALYA VHLDYGSSPV GTRMDYLSEF TVTMPILSFI GTNDPPEEPI
0501: VKVYCVQTLA IQQYTLDLCL CLPPPIENMG LEKSDSSVSR EANLVEGMSE PSGLKPTDLP SVDSVPKPSI IVNRSESANK LSFPSAEATS QAIVPPNGEP
0601: KTSGLPSQTS GAGSAYATLP QLPLSPRLSS KLSGYHTPVE AIEPVIPHHE LGGKTPSADY SVDRQMDAVG ERNLDVSSVE EISRSKDSNV TPDDDVSGMR
0701: SPSAFFKHPT HLVTPSEILM GVSSAEASIT TEDRRDRDAN IQDVNNDPRD TEVEVKEISE ARSTQNGEIN DHDETENCTS ENREKVFCSQ VSNLSTEMAR
0801: DCYPSTEGTF IPGESKAYGQ PIKAGDESGV DSRGGPAKLL KGKKQKAKNS QGPGLSSTSS NVANLADSFN EQSQSLSHPM TDLLPQLLAM QETMNQVMAS
0901: QKEMQRQLSN AATGPIGKES KRLEVALGRM IEKSSKSNAD ALWARIQEET VKNEKALRDH AQQIVNATTN FMSKELNAMF EKTIKKELAA IGPALARSVV
1001: PVIEKTVSSA ITESFQRGIG DKAVNQLDKS VNIKLEATVA RQIQAQFQTS GKQALQEGLR SSVESSVIPS FEKACKAMFD QIDSAFQKGI AEHTNAAQQR
1101: FDSGHSQLAH TLKESITSAS SVAQALSREL AETQRNLLAL AAAGANSGGS NSLVTQLSGG PLGALLEKVE APMDPTTELS RLISERKYEE SFTSALQRSD
1201: VSIVSWLCSQ VDLRGLLAMN PLPLSQGVLL SLLQQLACDI SKDTSRKLAW MTDVVAAINP SDQMIAVHAR PIFEQVYQIL HHHRNAPGSD VSAIRLIMHV
1301: INSMLMGCK

Arabidopsis Description

VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.