Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- nucleus 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017883_P002 | Maize | plastid | 93.19 | 91.22 |
| Zm00001d008821_P001 | Maize | extracellular | 8.75 | 82.39 |
| TraesCS6A01G286100.3 | Wheat | golgi | 72.33 | 76.32 |
| Os02t0722800-01 | Rice | plasma membrane | 76.14 | 76.03 |
| TraesCS6B01G314800.3 | Wheat | plastid | 75.09 | 74.04 |
| TraesCS6D01G266500.2 | Wheat | cytosol, plastid | 73.15 | 74.03 |
| HORVU6Hr1G071910.3 | Barley | cytosol, nucleus, plastid | 74.87 | 72.12 |
| VIT_00s2472g00010.t01 | Wine grape | cytosol, peroxisome | 8.08 | 70.59 |
| Zm00001d048003_P001 | Maize | extracellular | 8.83 | 69.41 |
| GSMUA_Achr3P10880_001 | Banana | plastid | 53.4 | 59.8 |
| GSMUA_Achr3P04200_001 | Banana | plastid | 52.36 | 57.42 |
| Zm00001d002560_P001 | Maize | mitochondrion | 20.27 | 56.93 |
| GSMUA_Achr5P04250_001 | Banana | plastid | 51.53 | 56.34 |
| GSMUA_Achr9P19760_001 | Banana | plastid | 55.87 | 56.21 |
| KRH63269 | Soybean | cytosol | 6.66 | 55.62 |
| VIT_00s0455g00020.t01 | Wine grape | plastid | 52.73 | 51.35 |
| Solyc03g071660.1.1 | Tomato | cytosol | 7.03 | 50.27 |
| VIT_19s0015g01380.t01 | Wine grape | plastid | 51.83 | 49.46 |
| CDY44010 | Canola | plastid | 45.62 | 49.23 |
| KRH46493 | Soybean | plastid | 48.77 | 48.44 |
| Solyc09g055300.1.1 | Tomato | cytosol | 3.22 | 48.31 |
| KRG98417 | Soybean | cytosol | 39.72 | 47.58 |
| Solyc07g021140.1.1 | Tomato | cytosol | 4.64 | 47.33 |
| CDY23587 | Canola | plastid | 45.62 | 47.29 |
| Bra034693.1-P | Field mustard | cytosol | 40.69 | 47.18 |
| KRH11647 | Soybean | endoplasmic reticulum | 49.36 | 46.98 |
| CDY23580 | Canola | plastid | 42.26 | 46.73 |
| AT3G13300.1 | Thale cress | cytosol | 46.9 | 46.65 |
| KRH36660 | Soybean | endoplasmic reticulum | 48.92 | 46.48 |
| Bra034692.1-P | Field mustard | cytosol, plastid | 46.22 | 46.47 |
| AT3G13290.1 | Thale cress | cytosol | 46.15 | 46.04 |
| Solyc11g032180.1.1 | Tomato | cytosol | 3.14 | 45.65 |
| Solyc07g065950.2.1 | Tomato | plastid | 48.02 | 45.63 |
| VIT_00s1618g00010.t01 | Wine grape | cytosol | 13.16 | 45.36 |
| CDY44011 | Canola | plastid | 43.38 | 45.17 |
| Solyc10g005920.2.1 | Tomato | plastid | 46.52 | 43.86 |
| VIT_03s0091g01220.t01 | Wine grape | cytosol | 10.4 | 42.51 |
| KRH46495 | Soybean | cytosol | 19.52 | 42.37 |
| Solyc02g005370.1.1 | Tomato | cytosol | 4.26 | 41.3 |
| Solyc11g039850.1.1 | Tomato | cytosol | 3.14 | 40.38 |
| Solyc12g062490.1.1 | Tomato | nucleus, plastid | 3.59 | 39.34 |
| VIT_03s0091g01230.t01 | Wine grape | nucleus | 5.24 | 26.82 |
Protein Annotations
| Gene3D:1.10.220.100 | MapMan:16.8.2.2.4 | Gene3D:2.130.10.10 | EntrezGene:8071761 | UniProt:C5XZS6 | ncoils:Coil |
| InterPro:EDC4_WD40 | EnsemblPlants:EES05610 | ProteinID:EES05610 | ProteinID:EES05610.1 | GO:GO:0000932 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0031087 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF16529 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR15598 | PANTHER:PTHR15598:SF6 | SMART:SM00320 | EnsemblPlantsGene:SORBI_3004G256500 | SUPFAM:SSF50978 | unigene:Sbi.52 |
| UniParc:UPI0001A85D06 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_002452634.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:60238034..60247841
Molecular Weight (calculated)
145743.0 Da
IEP (calculated)
5.722
GRAVY (calculated)
-0.390
Length
1337 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASPSGNPNP NPNPPFEIGK LFRPPNPMPT PTPNTIFPGV AGGPAGPPPP SGPYSYPPVT PPFHRGPYIH YPQDPHAMPR PVVSFPMPNP NLNPNPNANP
0101: NAAAPGPNPG ARLMQLLGNS GPTQLETAVS MPPPTSEFAQ PQPLPAMPSA PPARMLSSTS SKVPRGRLLG TGERAVHDVD SRLPGEAQPP QLEVTPITKY
0201: TSDPGLVLGR QIAVNRTYIV YGLKLGNIRV LNINTALRSL LRGHTQRVTD MAFFAEDVHR LASASVDGRI YVWRIDEGPD EENKPQITGK IEIAIQVVGE
0301: AEAYHPRICW HSHKQEILFV GIGNCVLRID TTKVGRGKDF TVEEPVKCHL EKLIDGVRLV GKHDGDVTDL SISQWMSTRL ASGSKDGTVK IWDDRKQVPL
0401: SIFKPHDGQA VYSVAFLTAP ERPNHINLIT AGPLNREVKI WASTNEDGWL LPSDSETWKC TQTLELVSSL EPRVEEAFFN QVAVLPQASL ILLANAKKNA
0501: IYAVHVEYGP DPASTRLDYI ADFTVAMPIL SLTGTHESQP DGEQVVQVYC VQTMAIQQYG LELSLCSPPT ADSTGFGRDP AISRVYEAPL EMAGTESSTG
0601: TSFTDSYSVS VLSKPTIDQS ADVDLKPSAP PLAYSEGDGS MPLPSAPLAP KMEVPGSGPA PGTRDIDQSA FDYTTNRNKE RDALKRQDTP MPIRKDILVK
0701: DEPRDGHSDV PMLPNPRLMF QVGGNATHLV TPSEIISGTL SSAENNDVSK SDGGKSQDVS SRSSRVAEVE PKHIDESKPD QNVGLEAVKE TQIVCENMEK
0801: TQSSLEQTVE MISERSVTTD KYSVEESQSS SDRRASDQIG VADENVLKKF VEIPEKIDYS SASREQSSSF TKEEKVLHPQ TSGQPSPPVS AFNSTESHEP
0901: LSSTYLPASS FPEAAATQGM LQQLMGMQKD MEKQLSTVVP ASIAKEGKRL ETSLGRTVEK SIKANIDAFW VRLQEENTKR EKADRERMQQ LVTLITNSIN
1001: KDLPSNMEKS LKKEISSLGP IVARAITPII EKCLTSAVYD SVQKGVGDKV CNQLEKSITG KLEATLARQI QMQFHTSGKQ ALQDALRTSF ESLLVPAFEQ
1101: TCKTMFEQID GAFQKGMSEH SIAIQQQVEA AHTPLALTLK ETINSASSIT QSFSSELLDG NRKLLALVTS GNAKAHNTSA LQPFNGPMGG PQEAEAPLDP
1201: MKELSRLISE RKFDEAFTMA LQRSDVSIVS WLCSQVDLRA LCAMTPVPLN QGVLLALLQQ LAIDIHNETS RKVQWMTDVA MAINPSDQMI AVHVRPIFEQ
1301: VYNQLAHQRT LPTTTASDGT SIRVIMHVIN SVLLSYK
0101: NAAAPGPNPG ARLMQLLGNS GPTQLETAVS MPPPTSEFAQ PQPLPAMPSA PPARMLSSTS SKVPRGRLLG TGERAVHDVD SRLPGEAQPP QLEVTPITKY
0201: TSDPGLVLGR QIAVNRTYIV YGLKLGNIRV LNINTALRSL LRGHTQRVTD MAFFAEDVHR LASASVDGRI YVWRIDEGPD EENKPQITGK IEIAIQVVGE
0301: AEAYHPRICW HSHKQEILFV GIGNCVLRID TTKVGRGKDF TVEEPVKCHL EKLIDGVRLV GKHDGDVTDL SISQWMSTRL ASGSKDGTVK IWDDRKQVPL
0401: SIFKPHDGQA VYSVAFLTAP ERPNHINLIT AGPLNREVKI WASTNEDGWL LPSDSETWKC TQTLELVSSL EPRVEEAFFN QVAVLPQASL ILLANAKKNA
0501: IYAVHVEYGP DPASTRLDYI ADFTVAMPIL SLTGTHESQP DGEQVVQVYC VQTMAIQQYG LELSLCSPPT ADSTGFGRDP AISRVYEAPL EMAGTESSTG
0601: TSFTDSYSVS VLSKPTIDQS ADVDLKPSAP PLAYSEGDGS MPLPSAPLAP KMEVPGSGPA PGTRDIDQSA FDYTTNRNKE RDALKRQDTP MPIRKDILVK
0701: DEPRDGHSDV PMLPNPRLMF QVGGNATHLV TPSEIISGTL SSAENNDVSK SDGGKSQDVS SRSSRVAEVE PKHIDESKPD QNVGLEAVKE TQIVCENMEK
0801: TQSSLEQTVE MISERSVTTD KYSVEESQSS SDRRASDQIG VADENVLKKF VEIPEKIDYS SASREQSSSF TKEEKVLHPQ TSGQPSPPVS AFNSTESHEP
0901: LSSTYLPASS FPEAAATQGM LQQLMGMQKD MEKQLSTVVP ASIAKEGKRL ETSLGRTVEK SIKANIDAFW VRLQEENTKR EKADRERMQQ LVTLITNSIN
1001: KDLPSNMEKS LKKEISSLGP IVARAITPII EKCLTSAVYD SVQKGVGDKV CNQLEKSITG KLEATLARQI QMQFHTSGKQ ALQDALRTSF ESLLVPAFEQ
1101: TCKTMFEQID GAFQKGMSEH SIAIQQQVEA AHTPLALTLK ETINSASSIT QSFSSELLDG NRKLLALVTS GNAKAHNTSA LQPFNGPMGG PQEAEAPLDP
1201: MKELSRLISE RKFDEAFTMA LQRSDVSIVS WLCSQVDLRA LCAMTPVPLN QGVLLALLQQ LAIDIHNETS RKVQWMTDVA MAINPSDQMI AVHVRPIFEQ
1301: VYNQLAHQRT LPTTTASDGT SIRVIMHVIN SVLLSYK
0001: MASSPGNTNP HNTPPFDLGI LFKPSSNPYP PPAASYPPPT GPFLHNQYDQ QHYAPPGISA QPSPVTQQQQ DVSSSSAATN LHPQRTLSYP TPPLNLQSPR
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK
Arabidopsis Description
VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.