Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G038490.4 | Barley | nucleus | 68.25 | 68.25 |
| TraesCS7B01G260100.1 | Wheat | cytosol | 44.76 | 46.08 |
| TraesCS7A01G368400.1 | Wheat | cytosol | 44.44 | 45.75 |
| TraesCS7D01G354500.1 | Wheat | cytosol | 43.81 | 45.1 |
| TraesCS6D01G169800.1 | Wheat | cytosol | 40.63 | 41.97 |
| TraesCS6B01G211000.1 | Wheat | cytosol | 40.0 | 41.31 |
| EER89986 | Sorghum | cytosol | 39.68 | 40.45 |
| Zm00001d046482_P001 | Maize | cytosol | 39.68 | 40.45 |
| Zm00001d036931_P001 | Maize | cytosol | 39.37 | 40.13 |
| EES06503 | Sorghum | cytosol | 39.37 | 39.37 |
| Zm00001d053607_P001 | Maize | cytosol | 39.05 | 39.3 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 36.83 | 37.66 |
| Os02t0209900-01 | Rice | cytosol | 37.14 | 37.62 |
| Bra031759.1-P | Field mustard | cytosol | 35.56 | 37.58 |
| CDY34656 | Canola | cytosol | 35.56 | 37.58 |
| CDY34843 | Canola | cytosol | 35.56 | 37.58 |
| AT1G61290.2 | Thale cress | cytosol | 35.87 | 37.29 |
| CDY20986 | Canola | cytosol | 35.24 | 37.25 |
| Bra016846.1-P | Field mustard | cytosol | 34.92 | 36.91 |
| KRH41917 | Soybean | cytosol | 35.56 | 36.84 |
| AT1G11250.1 | Thale cress | cytosol | 34.6 | 36.58 |
| CDY70107 | Canola | cytosol | 34.6 | 36.58 |
| Bra019872.1-P | Field mustard | cytosol | 34.6 | 36.58 |
| CDX97943 | Canola | cytosol | 34.6 | 36.58 |
| CDY19350 | Canola | cytosol | 34.6 | 36.58 |
| Solyc12g005580.1.1 | Tomato | cytosol | 35.56 | 36.13 |
| CDY48554 | Canola | cytosol | 34.92 | 36.07 |
| KRH10761 | Soybean | cytosol | 34.6 | 35.86 |
| KRH21567 | Soybean | cytosol | 34.6 | 35.86 |
| CDY21958 | Canola | cytosol | 34.6 | 35.74 |
| Bra034202.1-P | Field mustard | cytosol | 34.6 | 35.74 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 28.57 | 35.43 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 34.29 | 35.41 |
| PGSC0003DMT400035739 | Potato | cytosol | 34.6 | 35.16 |
| AT4G03330.1 | Thale cress | cytosol | 33.97 | 35.08 |
| PGSC0003DMT400055777 | Potato | cytosol | 33.97 | 34.41 |
| TraesCS6A01G182200.1 | Wheat | cytosol | 39.68 | 33.07 |
| GSMUA_Achr10P... | Banana | cytosol | 27.62 | 31.18 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 14.29 | 29.03 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 19.68 | 24.31 |
| HORVU5Hr1G026120.1 | Barley | cytosol | 22.86 | 23.53 |
| HORVU6Hr1G095330.1 | Barley | cytosol | 22.22 | 23.26 |
| HORVU2Hr1G057350.2 | Barley | cytosol | 22.86 | 21.88 |
| HORVU2Hr1G045350.3 | Barley | cytosol | 20.0 | 21.5 |
| HORVU4Hr1G011180.2 | Barley | cytosol | 24.76 | 21.49 |
| Bra031761.1-P | Field mustard | cytosol | 7.94 | 15.15 |
| HORVU6Hr1G028850.1 | Barley | cytosol | 13.97 | 14.38 |
| HORVU2Hr1G043130.15 | Barley | cytosol | 13.65 | 13.69 |
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 4.13 | 12.5 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G085550.1 | EnsemblPlantsGene:HORVU7Hr1G085550 | Gene3D:1.20.58.70 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016192 | InterPro:SNARE | InterPro:Syntaxin_N | ncoils:Coil | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF198 | PFAM:PF00804 | SEG:seg | SMART:SM00503 | SUPFAM:SSF47661 | UniParc:UPI000B46D440 |
| UniProt:A0A287X5X7 | MapMan:22.7.1.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:517553466..517555046
Molecular Weight (calculated)
34008.0 Da
IEP (calculated)
11.369
GRAVY (calculated)
-1.050
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSSSSF KKYADANPQT SAADMEAGGE GVANLDQFFS DVEALKEDLR GFETLHKRLQ STNEETKTAH DARAIKALRS RMDGDVEQVL KRAKGVKAKL
101: EALERDNANS RKAPGCGPGS STDRTRTSVV AGLGKKLKDV MDDFQGAEGE DGGGVQGDGG AAVLHDHGRA RGGEHDRLAH LVRGERVVPA EGDPGPGARA
201: GDGHHLGDPG AARRRQGHRA QPHGPAPGVP RHGRARRGAG APAQRHREPR RPRQLLRAPG HRRAGAGARD PEGHPQMDVL RRPRGHRARR RPRHAGAHQP
301: PHLDAQMISI RRRPM
101: EALERDNANS RKAPGCGPGS STDRTRTSVV AGLGKKLKDV MDDFQGAEGE DGGGVQGDGG AAVLHDHGRA RGGEHDRLAH LVRGERVVPA EGDPGPGARA
201: GDGHHLGDPG AARRRQGHRA QPHGPAPGVP RHGRARRGAG APAQRHREPR RPRQLLRAPG HRRAGAGARD PEGHPQMDVL RRPRGHRARR RPRHAGAHQP
301: PHLDAQMISI RRRPM
001: MNDLFSNSFK KNQAQLGDVE AGQETMNLDK FFEDVENVKD DMKGVEALYK KLQDSNEECK TVHNAKKVKE LRAKMDGDVA MVLKRVKIIK QKLEALEKAN
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK
Arabidopsis Description
SYP125Syntaxin-125 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXB0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.