Factsheet for VIT_12s0059g02060.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10761	Soybean	cytosol	80.66	80.92
KRH21567	Soybean	cytosol	80.33	80.59
KRH41917	Soybean	cytosol	77.7	77.96
VIT_00s0404g00100.t01	Wine grape	cytosol	77.7	76.95
Bra031761.1-P	Field mustard	cytosol	41.31	76.36
AT1G11250.1	Thale cress	cytosol	74.1	75.84
Bra016846.1-P	Field mustard	cytosol	74.1	75.84
CDY20986	Canola	cytosol	74.1	75.84
Bra019872.1-P	Field mustard	cytosol	73.77	75.5
CDX97943	Canola	cytosol	73.77	75.5
CDY70107	Canola	cytosol	73.77	75.5
CDY19350	Canola	cytosol	73.44	75.17
AT1G61290.2	Thale cress	cytosol	74.43	74.92
CDY34843	Canola	cytosol	73.11	74.83
CDY34656	Canola	cytosol	73.11	74.83
Bra031759.1-P	Field mustard	cytosol	72.46	74.16
Bra031760.1-P	Field mustard	cytosol, nucleus, plasma membrane	25.25	74.04
PGSC0003DMT400035739	Potato	cytosol	75.08	73.87
Solyc12g005580.1.1	Tomato	cytosol	74.43	73.23
PGSC0003DMT400055777	Potato	cytosol	73.77	72.35
GSMUA_Achr6P04820_001	Banana	cytosol	56.39	67.72
Zm00001d046482_P001	Maize	cytosol	68.2	67.31
EER89986	Sorghum	cytosol	67.87	66.99
Zm00001d036931_P001	Maize	cytosol	67.54	66.67
GSMUA_Achr10P...	Banana	cytosol	60.98	66.67
TraesCS6B01G211000.1	Wheat	cytosol	64.59	64.59
TraesCS6D01G169800.1	Wheat	cytosol	64.59	64.59
TraesCS7B01G260100.1	Wheat	cytosol	64.26	64.05
TraesCS7A01G368400.1	Wheat	cytosol	63.28	63.07
Os02t0209900-01	Rice	cytosol	63.93	62.7
TraesCS7D01G354500.1	Wheat	cytosol	62.62	62.42
EES06503	Sorghum	cytosol	63.28	61.27
Zm00001d053607_P001	Maize	cytosol	62.3	60.7
VIT_08s0032g01150.t01	Wine grape	cytosol	57.05	53.7
TraesCS6A01G182200.1	Wheat	cytosol	65.25	52.65
VIT_04s0008g02770.t01	Wine grape	cytosol	47.54	46.62
VIT_08s0032g00440.t01	Wine grape	cytosol	46.89	46.58
VIT_12s0059g02340.t01	Wine grape	cytosol	45.57	45.72
VIT_03s0038g04720.t01	Wine grape	cytosol	41.97	42.81
VIT_04s0043g00820.t01	Wine grape	cytosol	36.39	37.12
VIT_04s0023g01980.t01	Wine grape	cytosol	35.41	36.12
HORVU7Hr1G085550.1	Barley	cytosol	35.41	34.29
HORVU6Hr1G038490.4	Barley	nucleus	35.08	33.97

Protein Annotations

Gene3D:1.20.58.70	EntrezGene:100241360	wikigene:100241360	MapMan:22.7.1.1	ProteinID:CBI28926	ProteinID:CBI28926.3
ncoils:Coil	UniProt:D7TEK3	EMBL:FN595765	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	GO:GO:0048278	InterPro:IPR000727	EntrezGene:LOC100241360	wikigene:LOC100241360	PFAM:PF00804
PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF198	SMART:SM00397
SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI00015CB0EC	ArrayExpress:VIT_12s0059g02060	EnsemblPlantsGene:VIT_12s0059g02060	EnsemblPlants:VIT_12s0059g02060.t01	RefSeq:XP_002272992
RefSeq:XP_002272992.1	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:6863293..6864214

Molecular Weight (calculated)

34537.3 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.492

Length

305 amino acids

Sequence
(BLAST)

001: MNDLFSSSFK RFTDLKPQSF DVEAGGDAGR ESVNLEKFFE EVENVKDDMR AVENFYKKLQ DLNEESKTVH NAKTMKDLRA RMDTDVVQVL KRVKIIKGKL
101: EALERSNAAN RNHPGCGPGS SADRTRTSVV GGLGKKLKDM MDDFQNLRVR MNAEYKDTIE RRYFTITGEK ADEETIENLI SSGESETFLQ KAIQDQGRGQ
201: IMDTISELQE RHGAVKEIEK NLIELHQVFL DMAALVEAQG QHLNDIESHV AHASSFVRKG TDQLQIARNY QKSSRKWTCI AVGLAICLII VILFPVLKSL
301: DMIHL

Best Arabidopsis Sequence Match ( AT1G61290.1 )
(BLAST)

001: MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK

Arabidopsis Description

SYP124Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.