Factsheet for VIT_00s0404g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0059g02060.t01	Wine grape	cytosol	76.95	77.7
Solyc12g005580.1.1	Tomato	cytosol	75.65	75.16
PGSC0003DMT400055777	Potato	cytosol	75.32	74.6
PGSC0003DMT400035739	Potato	cytosol	74.68	74.19
GSMUA_Achr10P...	Banana	cytosol	64.94	71.68
Zm00001d046482_P001	Maize	cytosol	71.1	70.87
EER89986	Sorghum	cytosol	70.78	70.55
GSMUA_Achr6P04820_001	Banana	cytosol	58.12	70.47
Zm00001d036931_P001	Maize	cytosol	70.45	70.23
TraesCS6B01G211000.1	Wheat	cytosol	67.21	67.87
TraesCS6D01G169800.1	Wheat	cytosol	67.21	67.87
TraesCS7B01G260100.1	Wheat	cytosol	66.88	67.32
Os02t0209900-01	Rice	cytosol	67.53	66.88
TraesCS7A01G368400.1	Wheat	cytosol	65.91	66.34
TraesCS7D01G354500.1	Wheat	cytosol	65.58	66.01
EES06503	Sorghum	cytosol	66.23	64.76
Zm00001d053607_P001	Maize	cytosol	64.29	63.26
TraesCS6A01G182200.1	Wheat	cytosol	67.86	55.29
VIT_08s0032g01150.t01	Wine grape	cytosol	56.82	54.01
VIT_04s0008g02770.t01	Wine grape	cytosol	48.38	47.91
VIT_12s0059g02340.t01	Wine grape	cytosol	46.1	46.71
VIT_08s0032g00440.t01	Wine grape	cytosol	46.1	46.25
VIT_03s0038g04720.t01	Wine grape	cytosol	39.61	40.8
HORVU7Hr1G085550.1	Barley	cytosol	37.66	36.83
VIT_04s0043g00820.t01	Wine grape	cytosol	35.71	36.79
HORVU6Hr1G038490.4	Barley	nucleus	37.34	36.51
VIT_04s0023g01980.t01	Wine grape	cytosol	34.74	35.79

Protein Annotations

Gene3D:1.20.58.70	EntrezGene:100854510	wikigene:100854510	MapMan:22.7.1.1	ProteinID:CCB48408	ProteinID:CCB48408.1
ncoils:Coil	UniProt:F6H865	EMBL:FN595272	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	GO:GO:0048278	InterPro:IPR000727	EntrezGene:LOC100854510	wikigene:LOC100854510	PFAM:PF00804
PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF198	SMART:SM00397
SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI000210A6AF	ArrayExpress:VIT_00s0404g00100	EnsemblPlantsGene:VIT_00s0404g00100	EnsemblPlants:VIT_00s0404g00100.t01	RefSeq:XP_003635313
RefSeq:XP_003635313.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:27744369..27745439

Molecular Weight (calculated)

34661.6 Da

IEP (calculated)

6.695

GRAVY (calculated)

-0.551

Length

308 amino acids

Sequence
(BLAST)

001: KSVKMNDLFS SSFKKYTDLK QQTYMDDMES GKEAVNLDKF FEDVENVKQD MGGVEKLYKQ LQDANEESKT VHNAKTMKDL RARMDSDVTQ VLKRVKMIKG
101: KLEGLERSNA ASRNVPGCGP GSSADRTRSS VVSGLGKKLK DMMDDFQGLR AKMSTEYKET VERRYYTITG QKADEDTIEN LISSGESESF LQKAIQEQGR
201: GQIMDTISEI QERHDAVKEI EKNLIELHQV FLDMAALVEA QGQQLNDIES HVAHASSFVR RGTEQLQVAR EYQKGSRKWT CIAIILGAIV VGLLLLPILP
301: TLISMLPK

Best Arabidopsis Sequence Match ( AT1G61290.1 )
(BLAST)

001: MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK

Arabidopsis Description

SYP124Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.