Factsheet for VIT_08s0032g00440.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g056810.2.1	Tomato	cytosol	69.71	84.58
KRH08507	Soybean	cytosol	84.04	83.77
Solyc10g081580.1.1	Tomato	cytosol, plastid	82.41	81.61
PGSC0003DMT400072284	Potato	cytosol	82.41	81.61
CDY51747	Canola	cytosol	34.53	78.52
CDY21160	Canola	cytosol	33.88	78.2
CDY50666	Canola	cytosol	33.88	77.04
KRH70169	Soybean	cytosol	36.81	76.87
AT3G03800.1	Thale cress	cytosol	75.24	75.49
Bra031972.1-P	Field mustard	cytosol	67.43	73.93
CDY29963	Canola	cytosol	73.94	73.23
Bra036431.1-P	Field mustard	cytosol	64.5	71.22
CDY51748	Canola	cytosol	40.72	70.62
CDY50665	Canola	cytosol	39.74	70.11
TraesCS2B01G263700.1	Wheat	cytosol	68.73	69.87
TraesCS2D01G248900.1	Wheat	cytosol	68.73	69.87
GSMUA_Achr2P17410_001	Banana	cytosol	66.78	69.49
Zm00001d007902_P001	Maize	mitochondrion, plasma membrane	68.4	69.08
EER98026	Sorghum	cytosol	68.08	68.98
GSMUA_Achr2P01540_001	Banana	cytosol	66.45	68.46
CDY21161	Canola	cytosol	39.74	68.16
VIT_12s0059g02340.t01	Wine grape	cytosol	66.12	66.78
TraesCS7B01G394300.1	Wheat	cytosol	64.82	65.46
Os06t0168500-01	Rice	plasma membrane	64.5	64.92
TraesCS7A01G481800.1	Wheat	cytosol	63.84	64.47
HORVU6Hr1G095330.1	Barley	cytosol	62.87	64.12
TraesCS5B01G034800.1	Wheat	cytosol	63.19	64.03
EES16084	Sorghum	cytosol	63.84	63.84
Zm00001d041716_P002	Maize	cytosol	65.15	63.09
HORVU5Hr1G026120.1	Barley	cytosol	62.87	63.07
TraesCS2A01G246600.1	Wheat	cytosol	68.08	62.76
TraesCS5B01G035600.1	Wheat	cytosol	62.22	61.81
TraesCS5A01G096800.1	Wheat	cytosol	61.56	61.76
TraesCS5B01G102700.1	Wheat	cytosol	61.24	61.44
TraesCS5D01G109500.1	Wheat	cytosol	61.24	61.44
GSMUA_Achr7P16680_001	Banana	plasma membrane	74.27	60.96
HORVU2Hr1G057350.2	Barley	cytosol	64.82	60.49
Zm00001d018867_P002	Maize	plastid	67.1	52.69
VIT_12s0059g02060.t01	Wine grape	cytosol	46.58	46.89
VIT_00s0404g00100.t01	Wine grape	cytosol	46.25	46.1
VIT_08s0032g01150.t01	Wine grape	cytosol	46.91	44.44
VIT_04s0008g02770.t01	Wine grape	cytosol	40.72	40.19
VIT_03s0038g04720.t01	Wine grape	cytosol	33.88	34.78
TraesCS1A01G088800.1	Wheat	cytosol	30.94	33.1
TraesCS5A01G240200.3	Wheat	mitochondrion	22.8	31.67
VIT_04s0043g00820.t01	Wine grape	cytosol	30.62	31.44
VIT_04s0023g01980.t01	Wine grape	cytosol	30.29	31.1

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	EntrezGene:100265088	wikigene:100265088	MapMan:22.7.1.1	ProteinID:CBI39074
ProteinID:CBI39074.3	ncoils:Coil	UniProt:D7U8L0	EMBL:FN596742	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005802	GO:GO:0005886	GO:GO:0006810	GO:GO:0006886
GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009504	GO:GO:0009506	GO:GO:0009719
GO:GO:0009737	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0031201	GO:GO:0048278	GO:GO:0061025	InterPro:IPR000727	EntrezGene:LOC100265088
wikigene:LOC100265088	PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF153	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS
InterPro:Syntaxin_N	TIGR:TC62558	TIGR:TC67792	TIGR:TC68864	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI00015CA608	ArrayExpress:VIT_08s0032g00440	EnsemblPlantsGene:VIT_08s0032g00440	EnsemblPlants:VIT_08s0032g00440.t01	unigene:Vvi.8931	RefSeq:XP_002266162
RefSeq:XP_002266162.1	RefSeq:XP_010653211.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:3554103..3577001

Molecular Weight (calculated)

34665.8 Da

IEP (calculated)

7.579

GRAVY (calculated)

-0.502

Length

307 amino acids

Sequence
(BLAST)

001: MNDLLSESFE IPRGQASREG DIELGERALQ NSGELGLENF FKKVQEIEKQ NDKLNVQLKK LQDAHEESKA VTKAAAMKAI KKRMEKDVDE VGKIARSIKA
101: KVEELDKENL ANRQKPGCGK GTGVDRSRTA TTVALKKKFK DKMAEFQVLR ESIHQEYREV VERRVFTVTG TRADEETIDR LIETGDSEQI FQKAIQEQGR
201: GQIMDTLAEI QERHDAVREV ERKLLDLQQI FLDMAVLVDA QGDMLDNIES QVSSAVDHVQ SGNTALQRAK KLQRSSRKWM CIAIIILLII VVIIVVAVLK
301: PWSKNGA

Best Arabidopsis Sequence Match ( AT5G08080.1 )
(BLAST)

001: MNDLLKGSFE LPRGQSSREG DVELGEQQGG DQGLEDFFKK VQVIDKQYDK LDKLLKKLQA SHEESKSVTK APAMKAIKKT MEKDVDEVGS IARFIKGKLE
101: ELDRENLANR QKPGCAKGSG VDRSRTATTL SLKKKLKDKM AEFQVLRENI QQEYRDVVDR RVYTVTGERA DEDTIDELIE TGNSEQIFQK AIQEQGRGQV
201: MDTLAEIQER HDAVRDLEKK LLDLQQIFLD MAVLVDAQGE MLDNIESQVS SAVDHVQSGN TALQRAKSLQ KNSRKWMCIA IIILLIVVAV IVVGVLKPWK
301: NKSA

Arabidopsis Description

SYP132Syntaxin of plants 132 [Source:UniProtKB/TrEMBL;Acc:F4K9K2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.