Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g053760.2.1 | Tomato | cytosol | 81.35 | 81.35 |
| PGSC0003DMT400041982 | Potato | cytosol | 80.06 | 80.06 |
| KRH08461 | Soybean | cytosol | 79.1 | 76.4 |
| CDX97497 | Canola | cytosol | 72.67 | 74.59 |
| KRH70119 | Soybean | cytosol | 76.21 | 74.53 |
| Bra030733.1-P | Field mustard | cytosol | 72.35 | 74.01 |
| CDY31137 | Canola | cytosol | 72.35 | 74.01 |
| Bra018615.1-P | Field mustard | cytosol | 71.7 | 72.64 |
| CDX95050 | Canola | cytosol | 71.38 | 72.31 |
| CDX93553 | Canola | cytosol | 71.38 | 72.31 |
| AT1G08560.1 | Thale cress | cytosol | 71.38 | 71.61 |
| GSMUA_Achr1P25170_001 | Banana | cytosol | 55.63 | 70.61 |
| KXG37622 | Sorghum | cytosol | 64.95 | 64.74 |
| TraesCS4B01G067100.1 | Wheat | cytosol | 33.44 | 63.8 |
| Zm00001d013323_P001 | Maize | cytosol | 64.31 | 63.69 |
| Zm00001d033919_P001 | Maize | plasma membrane | 63.67 | 63.26 |
| Os03t0736500-01 | Rice | cytosol, plasma membrane | 62.7 | 62.7 |
| TraesCS4D01G066100.1 | Wheat | cytosol | 61.74 | 60.76 |
| TraesCS4B01G067200.1 | Wheat | cytosol | 61.09 | 60.51 |
| TraesCS4A01G247700.1 | Wheat | cytosol | 60.77 | 59.81 |
| HORVU4Hr1G011180.2 | Barley | cytosol | 61.41 | 52.62 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 47.91 | 48.38 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 46.62 | 47.54 |
| VIT_03s0038g04720.t01 | Wine grape | cytosol | 44.05 | 45.82 |
| VIT_12s0059g02340.t01 | Wine grape | cytosol | 43.73 | 44.74 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 45.02 | 43.21 |
| VIT_08s0032g00440.t01 | Wine grape | cytosol | 40.19 | 40.72 |
| VIT_04s0043g00820.t01 | Wine grape | cytosol | 37.94 | 39.46 |
| VIT_04s0023g01980.t01 | Wine grape | cytosol | 37.62 | 39.13 |
| TraesCS6B01G175300.1 | Wheat | cytosol | 29.58 | 30.07 |
| TraesCS6A01G147100.1 | Wheat | cytosol | 29.26 | 29.74 |
| TraesCS6D01G136400.1 | Wheat | cytosol | 29.26 | 29.74 |
| HORVU6Hr1G028850.1 | Barley | cytosol | 28.62 | 29.09 |
| Zm00001d035331_P001 | Maize | cytosol | 27.01 | 28.19 |
| OQU78880 | Sorghum | cytosol | 27.33 | 27.6 |
| Os12t0192300-00 | Rice | plasma membrane | 29.58 | 26.44 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | EntrezGene:100254385 | wikigene:100254385 | MapMan:13.4.2.3.1 | MapMan:22.7.1.1 |
| EMBL:AM483348 | ProteinID:CAN79713 | ProteinID:CAN79713.1 | ProteinID:CCB46663 | ProteinID:CCB46663.1 | UniProt:F6H3C6 |
| EMBL:FN595231 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0006887 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009504 | GO:GO:0009506 |
| GO:GO:0009524 | GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048278 | GO:GO:0061025 | InterPro:IPR000727 | EntrezGene:LOC100254385 |
| wikigene:LOC100254385 | PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF91 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS |
| InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI00015C834A | ArrayExpress:VIT_04s0008g02770 | EnsemblPlantsGene:VIT_04s0008g02770 |
| EnsemblPlants:VIT_04s0008g02770.t01 | unigene:Vvi.19773 | RefSeq:XP_002283098 | RefSeq:XP_002283098.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr4:+:2303744..2304808
Molecular Weight (calculated)
35416.1 Da
IEP (calculated)
6.422
GRAVY (calculated)
-0.453
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLMTKSFI SYVDLKKEAM KDLEAGPEYD LQMSGTQMDR NLGLFLEEAE KVKQEMGLIR EILGRLHEAN EESKSLHKPE ALKSLRNRIN ADIIGVQKKA
101: RAIKSQLEEM DRANAANMRL SGYKEGTPVY RTRAAVTNGL RKKLKELMMD FQGLRQRMMT EYKETVGRRY FTVTGEYPDE EVIEKIISNG EGGEEFLGRA
201: IQEHGRGKVL ETVVEIQDRH DAAKEIEKSL LELHQVFLDM AIMVEAQGEQ MDDIEHHVMN AAQYVKDGTK NLKTAKDYQR SSRKCMCLGV ILLLILILIV
301: VIPIATSFSN S
101: RAIKSQLEEM DRANAANMRL SGYKEGTPVY RTRAAVTNGL RKKLKELMMD FQGLRQRMMT EYKETVGRRY FTVTGEYPDE EVIEKIISNG EGGEEFLGRA
201: IQEHGRGKVL ETVVEIQDRH DAAKEIEKSL LELHQVFLDM AIMVEAQGEQ MDDIEHHVMN AAQYVKDGTK NLKTAKDYQR SSRKCMCLGV ILLLILILIV
301: VIPIATSFSN S
001: MNDLMTKSFM SYVDLKKAAM KDMEAGPDFD LEMASTKADK MDENLSSFLE EAEYVKAEMG LISETLARIE QYHEESKGVH KAESVKSLRN KISNEIVSGL
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
Arabidopsis Description
KNSYP111 [Source:UniProtKB/TrEMBL;Acc:A0A178WAC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.