CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88512
EER90393
EER90536
EER90537
EER90540
EER90550
EER93866
EER96269
EER96429
EER97166
EER98344
EER99434
EER99750
EES00248
EES00734
EES03542
EES04817
EES04818
EES05610
EES05621
EES06539
EES06560
EES06968
EES10850
EES12457
EES12864
EES13437
EES14121
EES15405
EES15996
EES17871
EES18108
EES18535
EES18638
EES19208
KXG20149
KXG20895
KXG23748
KXG27825
KXG29884
KXG31594
KXG32490
KXG34983
KXG39115
OQU77196
OQU78327
OQU80827
OQU85305
OQU90309
OQU92521

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08560.1	EER90540	AT1G09630.1	19959995
AT1G08560.1	EER98344	AT1G09630.1	19959995
AT1G08560.1	OQU77196	AT1G09630.1	19959995
AT1G08560.1	EER93866	AT1G14320.1	24556609
AT1G08560.1	EES06560	AT1G14320.1	24556609
AT1G08560.1	EER90536	AT1G27400.1	24556609
AT1G08560.1	EER90537	AT1G27400.1	24556609
AT1G08560.1	EES19208	AT1G27400.1	24556609
AT1G08560.1	OQU80827	AT1G27400.1	24556609
AT1G08560.1	EES12864	AT1G43170.1	24556609
AT1G08560.1	KXG27825	AT1G43170.1	24556609
AT1G08560.1	EES06968	AT1G59750.1	19959995
AT1G08560.1	EES10850	AT1G59750.1	19959995
AT1G08560.1	EER90550	AT2G17360.1	24556609
AT1G08560.1	EES00734	AT2G17360.1	24556609
AT1G08560.1	EES18108	AT2G17360.1	24556609
AT1G08560.1	KXG32490	AT2G17360.1	24556609
AT1G08560.1	EER96269	AT2G18020.1	24556609
AT1G08560.1	EES18535	AT2G18020.1	24556609
AT1G08560.1	KXG23748	AT2G18020.1	24556609
AT1G08560.1	OQU78327	AT2G18020.1	24556609
AT1G08560.1	EER90393	AT2G35190.1	23515225
AT1G08560.1	EES00248	AT2G42740.1	24556609
AT1G08560.1	EES04817	AT2G42740.1	24556609
AT1G08560.1	EES04818	AT2G42740.1	24556609
AT1G08560.1	EES17871	AT2G42740.1	24556609
AT1G08560.1	KXG20149	AT2G42740.1	24556609
AT1G08560.1	KXG29884	AT2G42740.1	24556609
AT1G08560.1	KXG31594	AT2G42740.1	24556609
AT1G08560.1	EES14121	AT3G02080.1	24556609
AT1G08560.1	KXG39115	AT3G02080.1	24556609
AT1G08560.1	EER88512	AT3G04920.1	24556609
AT1G08560.1	EES03542	AT3G04920.1	24556609
AT1G08560.1	EES06539	AT3G04920.1	24556609
AT1G08560.1	EES18638	AT3G09740.1	23515225
AT1G08560.1	EES05610	AT3G13300.1	24556609
AT1G08560.1	EES12457	AT3G48930.1	24556609
AT1G08560.1	OQU85305	AT3G48930.1	24556609
AT1G08560.1	EER99434	AT4G18060.1	24556609
AT1G08560.1	KXG20895	AT4G24190.1	24556609
AT1G08560.1	EES05621	AT4G26230.1	24556609
AT1G08560.1	EES15405	AT4G26230.1	24556609
AT1G08560.1	EER96429	AT4G32070.1	24556609
AT1G08560.1	EER97166	AT4G32070.1	24556609
AT1G08560.1	EES13437	AT4G32070.1	24556609
AT1G08560.1	EER99750	AT5G15200.1	24556609
AT1G08560.1	EES15996	AT5G15200.1	24556609
AT1G08560.1	OQU90309	AT5G15200.1	24556609
AT1G08560.1	OQU92521	AT5G15200.1	24556609
AT1G08560.1	KXG34983	AT5G61210.1	23515225

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035331_P001	Maize	cytosol	86.04	88.93
HORVU6Hr1G028850.1	Barley	cytosol	65.58	66.01
TraesCS6B01G175300.1	Wheat	cytosol	65.26	65.69
TraesCS6A01G147100.1	Wheat	cytosol	65.26	65.69
TraesCS6D01G136400.1	Wheat	cytosol	64.94	65.36
Os12t0192300-00	Rice	plasma membrane	61.04	54.02
GSMUA_Achr1P25170_001	Banana	cytosol	29.55	37.14
KXG37622	Sorghum	cytosol	32.14	31.73
KRH08461	Soybean	cytosol	30.52	29.19
EER93336	Sorghum	cytosol	28.57	28.66
KRH70119	Soybean	cytosol	29.55	28.62
EES06503	Sorghum	cytosol	29.22	28.57
Solyc06g053760.2.1	Tomato	cytosol	28.57	28.3
PGSC0003DMT400041982	Potato	cytosol	27.92	27.65
EER97312	Sorghum	cytosol	27.27	27.54
VIT_04s0008g02770.t01	Wine grape	cytosol	27.6	27.33
EER98026	Sorghum	cytosol	26.62	27.06
CDY31137	Canola	cytosol	26.3	26.64
Bra030733.1-P	Field mustard	cytosol	26.3	26.64
EER89986	Sorghum	cytosol	26.62	26.54
CDX97497	Canola	cytosol	25.97	26.4
CDX93553	Canola	cytosol	26.3	26.38
Bra018615.1-P	Field mustard	cytosol	25.97	26.06
AT1G08560.1	Thale cress	cytosol	25.97	25.81
CDX95050	Canola	cytosol	25.32	25.41
EES16084	Sorghum	cytosol	24.35	24.43

Protein Annotations

Gene3D:1.20.58.70	MapMan:22.7.1.1	UniProt:A0A1Z5R584	ncoils:Coil	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR000727	EnsemblPlants:OQU78880
ProteinID:OQU78880	ProteinID:OQU78880.1	PFAM:PF00804	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF155
SMART:SM00397	InterPro:SNARE	EnsemblPlantsGene:SORBI_3008G067000	SUPFAM:SSF47661	InterPro:Syntaxin_N	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI000B4246F7	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:7573986..7575224

Molecular Weight (calculated)

31534.6 Da

IEP (calculated)

5.535

GRAVY (calculated)

0.040

Length

308 amino acids

Sequence
(BLAST)

001: MNDLMTDSFV AAAAKAQQGG AAAAAPAPAG GDGPELGAFL AEADAAKTEM SALRDELSHL RSAHEASKNA VVGSGEARAA TQAALVRLLG SARRLRARLA
101: SMDRRAPAPA AQAAAGLGRR VRDLTADVQA LRRQVSAERR SDVARRYLAV AGDAPTEEQL DRLLASSTED PSDAAMRAAL LSASGAEEQE ETAKEVAEVE
201: RGLLELQQLF LDMAALVDAQ GAPLDDIERQ VGAAAGDVAA AEAEFSEARR LQGAARRRRV CLAGGIVALL LVGVAVAVVV AMVLVRRGGG GGAAKLVLQL
301: AAAALPAR

Best Arabidopsis Sequence Match ( AT1G61290.1 )
(BLAST)

001: MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK

Arabidopsis Description

SYP124Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.