CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G244700.1	Wheat	cytosol	85.9	86.47
TraesCS2D01G224100.1	Wheat	cytosol	85.57	86.14
TraesCS2A01G219200.1	Wheat	cytosol	85.25	85.81
HORVU2Hr1G045350.3	Barley	cytosol	82.3	85.67
Zm00001d021664_P001	Maize	cytosol	86.23	73.88
Os07t0528900-00	Rice	cytosol, extracellular, plasma membrane	26.89	73.87
VIT_12s0059g02340.t01	Wine grape	cytosol	66.23	66.45
KRH22542	Soybean	endoplasmic reticulum, extracellular, mitochondrion	65.25	65.03
KRH26811	Soybean	cytosol	64.59	64.38
Solyc07g052470.2.1	Tomato	cytosol	63.61	63.61
GSMUA_Achr9P24850_001	Banana	cytosol	56.72	61.79
EER98026	Sorghum	cytosol	61.31	61.72
PGSC0003DMT400065519	Potato	cytosol	61.97	60.58
EES16084	Sorghum	cytosol	58.03	57.65
EER93336	Sorghum	cytosol	44.26	43.97
EER89986	Sorghum	cytosol	41.97	41.42
KXG37622	Sorghum	cytosol	42.3	41.35
EES06503	Sorghum	cytosol	42.3	40.95
HORVU2Hr1G043130.15	Barley	cytosol	36.72	35.67
TraesCS2B01G238200.2	Wheat	cytosol	35.41	35.06
TraesCS2D01G219400.1	Wheat	cytosol	35.74	31.41
TraesCS2A01G213400.1	Wheat	cytosol	26.89	30.6
OQU78880	Sorghum	cytosol	27.54	27.27

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.1	UniProt:C5XA38	ncoils:Coil	EnsemblPlants:EER97312
ProteinID:EER97312	ProteinID:EER97312.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005886
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0016787	GO:GO:0042626	GO:GO:0055085	GO:GO:0061025
InterPro:IPR000727	ProteinID:OQU90036.1	ProteinID:OQU90037.1	PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF153	SMART:SM00397	SMART:SM00503	InterPro:SNARE
EnsemblPlantsGene:SORBI_3002G323700	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI00081ABD3D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:69478828..69481990

Molecular Weight (calculated)

34968.3 Da

IEP (calculated)

7.510

GRAVY (calculated)

-0.605

Length

305 amino acids

Sequence
(BLAST)

001: MNNLLTDSFE KDEKPERERD IEMGNRNPKD NSDYGLKDFF EQVKEIETLL DKMSNIVHKL QEANEESKSV TKASAMKAIK GRMEKDIDEV GKIARNVKVK
101: LEQMDRNNLE NRKKPGCGKG TSVDRSRMSM TIALKKKLKE RMNDFQNLRQ TIQEEYREVV ERRIFTVTGT KPSEEVIDRF IETGSSEQIF ERAIQGTGRG
201: QILAAVEEIQ ERHDAVMEIE KRLLELQQIF ADMAALVDAQ GEVLDNIENQ VQNAVNHVVT GTEALREAKN YQKKSRKCMM IAIIILLVIA IIVVLSILKP
301: WAKSK

Best Arabidopsis Sequence Match ( AT3G03800.1 )
(BLAST)

001: MNDLLKGSLE FSRDRSNRSD IESGHGPGNS GDLGLSGFFK KVQEIEKQYE KLDKHLNKLQ GAHEETKAVT KAPAMKSIKQ RMERDVDEVG RISRFIKGKI
101: EELDRENLEN RTKPGCGKGT GVDRTRTATT IAVKKKFKDK ISEFQTLRQN IQQEYREVVE RRVFTVTGQR ADEETVDRLI ETGDSEQIFQ KAIREQGRGQ
201: IMDTLAEIQE RHDAVRDLEK KLLDLQQVFL DMAVLVDAQG EMLDNIENMV SSAVDHVQSG NNQLTKAVKS QKSSRKWMCI AILILLIIII ITVISVLKPW
301: TQKNGA

Arabidopsis Description

SYP131Syntaxin of plants 131 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.