Factsheet for VIT_12s0059g02340.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g052470.2.1	Tomato	cytosol	77.3	77.05
KRH22542	Soybean	endoplasmic reticulum, extracellular, mitochondrion	76.32	75.82
KRH26811	Soybean	cytosol	76.32	75.82
PGSC0003DMT400065519	Potato	cytosol	74.34	72.44
TraesCS2D01G224100.1	Wheat	cytosol	68.75	68.98
TraesCS2B01G244700.1	Wheat	cytosol	68.75	68.98
TraesCS2A01G219200.1	Wheat	cytosol	68.09	68.32
HORVU2Hr1G045350.3	Barley	cytosol	64.8	67.24
EER97312	Sorghum	cytosol	66.45	66.23
VIT_08s0032g00440.t01	Wine grape	cytosol	66.78	66.12
Os07t0528900-00	Rice	cytosol, extracellular, plasma membrane	23.36	63.96
GSMUA_Achr9P24850_001	Banana	cytosol	55.92	60.71
Zm00001d021664_P001	Maize	cytosol	60.53	51.69
VIT_00s0404g00100.t01	Wine grape	cytosol	46.71	46.1
VIT_12s0059g02060.t01	Wine grape	cytosol	45.72	45.57
VIT_04s0008g02770.t01	Wine grape	cytosol	44.74	43.73
VIT_08s0032g01150.t01	Wine grape	cytosol	43.75	41.05
VIT_03s0038g04720.t01	Wine grape	cytosol	34.54	35.12
VIT_04s0043g00820.t01	Wine grape	cytosol	30.92	31.44
VIT_04s0023g01980.t01	Wine grape	cytosol	30.59	31.1
TraesCS2B01G238200.2	Wheat	cytosol	28.62	28.25
HORVU2Hr1G043130.15	Barley	cytosol	28.95	28.03
TraesCS2A01G213400.1	Wheat	cytosol	22.7	25.75
TraesCS2D01G219400.1	Wheat	cytosol	28.62	25.07

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	EntrezGene:100251625	wikigene:100251625	MapMan:22.7.1.1	ProteinID:CCB52046
ProteinID:CCB52046.1	ncoils:Coil	UniProt:F6HIK0	EMBL:FN595765	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0006887	GO:GO:0006906
GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0031201	GO:GO:0048278	InterPro:IPR000727	EntrezGene:LOC100251625	wikigene:LOC100251625
PFAM:PF00804	PFAM:PF05739	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF153	SMART:SM00397
SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI0002109625	ArrayExpress:VIT_12s0059g02340	EnsemblPlantsGene:VIT_12s0059g02340	EnsemblPlants:VIT_12s0059g02340.t01	RefSeq:XP_002273906	RefSeq:XP_002273906.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:7133958..7137108

Molecular Weight (calculated)

34678.2 Da

IEP (calculated)

9.026

GRAVY (calculated)

-0.539

Length

304 amino acids

Sequence
(BLAST)

001: MNDLLTDSFV GDAKVQPPKE RDIEMGTRVL RTNSDLGLEA FNKQIQEVEK QVDKLTFLLK KLKDANEESK SVTKASAMKE IKKRLEKDVD EVGKIAQNVK
101: AKLEAINRDN LANRKKPGCE KGTGVDRSRK NMTNALTKKF KDLMIDFQAL RQKMQDEYRE VVERRVMTVT GTRPDEETID NLIETGNSEQ IFQKAIQEMG
201: RGQVLATLEE IQERHDTVKE IEKKLLDLHQ IYLDMAVLVE AQGDLLNNIE NQVTNAVDHV QWGTDALRTA KSLQKKSRKC MMFAIILILI IAAIITLSVL
301: KPWK

Best Arabidopsis Sequence Match ( AT5G08080.1 )
(BLAST)

001: MNDLLKGSFE LPRGQSSREG DVELGEQQGG DQGLEDFFKK VQVIDKQYDK LDKLLKKLQA SHEESKSVTK APAMKAIKKT MEKDVDEVGS IARFIKGKLE
101: ELDRENLANR QKPGCAKGSG VDRSRTATTL SLKKKLKDKM AEFQVLRENI QQEYRDVVDR RVYTVTGERA DEDTIDELIE TGNSEQIFQK AIQEQGRGQV
201: MDTLAEIQER HDAVRDLEKK LLDLQQIFLD MAVLVDAQGE MLDNIESQVS SAVDHVQSGN TALQRAKSLQ KNSRKWMCIA IIILLIVVAV IVVGVLKPWK
301: NKSA

Arabidopsis Description

SYP132Syntaxin of plants 132 [Source:UniProtKB/TrEMBL;Acc:F4K9K2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.