Factsheet for TraesCS2D01G224100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G219200.1	Wheat	cytosol	99.01	99.01
TraesCS2B01G244700.1	Wheat	cytosol	98.68	98.68
HORVU2Hr1G045350.3	Barley	cytosol	94.06	97.27
EER97312	Sorghum	cytosol	86.14	85.57
Os07t0528900-00	Rice	cytosol, extracellular, plasma membrane	26.4	72.07
VIT_12s0059g02340.t01	Wine grape	cytosol	68.98	68.75
KRH22542	Soybean	endoplasmic reticulum, extracellular, mitochondrion	67.0	66.34
Zm00001d021664_P001	Maize	cytosol	77.56	66.01
KRH26811	Soybean	cytosol	66.34	65.69
GSMUA_Achr9P24850_001	Banana	cytosol	59.74	64.64
Solyc07g052470.2.1	Tomato	cytosol	64.69	64.26
TraesCS2D01G248900.1	Wheat	cytosol	62.38	62.58
PGSC0003DMT400065519	Potato	cytosol	62.05	60.26
TraesCS5D01G109500.1	Wheat	cytosol	59.41	58.82
TraesCS6D01G169800.1	Wheat	cytosol	43.89	43.61
TraesCS7D01G354500.1	Wheat	cytosol	41.91	41.5
TraesCS4D01G066100.1	Wheat	cytosol	38.61	37.03
TraesCS2D01G219400.1	Wheat	cytosol	34.32	29.97
TraesCS6D01G136400.1	Wheat	cytosol	24.75	24.51

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	InterPro:IPR000727	PFAM:PF00804
PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF153	SMART:SM00397
SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix
InterPro:T_SNARE_dom	EnsemblPlantsGene:TraesCS2D01G224100	EnsemblPlants:TraesCS2D01G224100.1	TIGR:cd00179	TIGR:cd15848	SEG:seg

Description

No Description!

Coordinates

chr2D:+:191234169..191236845

Molecular Weight (calculated)

34507.1 Da

IEP (calculated)

9.042

GRAVY (calculated)

-0.483

Length

303 amino acids

Sequence
(BLAST)

001: MNNLLTDSFE MDAKPPKERD IEMGRQNSKD KSDYGLEDFF KEVKEIEMLL DKMSNIVQKL QEANEESKSV TKASAMKAIK GRMEKDIDEV GKIARSIKVK
101: LERMDRNNLA NRKKPGCGKG TSVDRSRMSM TIALKKRLKE RMNDFQNLRQ TIQQEYREVV ERRFFTVTGT KPSDEVIDNL IETGSSEQIF EKAIQGIGRG
201: QIMATVEEIQ ERHDVVVDIE KKLLELQQIF ADMAALVDAQ GEILDNIESQ VQNAVNHVQT GTEALRSAKS LQKKSRKCMM IAIIMLLIIA VIIVLSVLKP
301: WAK

Best Arabidopsis Sequence Match ( AT3G03800.1 )
(BLAST)

001: MNDLLKGSLE FSRDRSNRSD IESGHGPGNS GDLGLSGFFK KVQEIEKQYE KLDKHLNKLQ GAHEETKAVT KAPAMKSIKQ RMERDVDEVG RISRFIKGKI
101: EELDRENLEN RTKPGCGKGT GVDRTRTATT IAVKKKFKDK ISEFQTLRQN IQQEYREVVE RRVFTVTGQR ADEETVDRLI ETGDSEQIFQ KAIREQGRGQ
201: IMDTLAEIQE RHDAVRDLEK KLLDLQQVFL DMAVLVDAQG EMLDNIENMV SSAVDHVQSG NNQLTKAVKS QKSSRKWMCI AILILLIIII ITVISVLKPW
301: TQKNGA

Arabidopsis Description

SYP131Syntaxin of plants 131 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.