CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 25724908
endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26811	Soybean	cytosol	98.37	98.37
VIT_12s0059g02340.t01	Wine grape	cytosol	75.82	76.32
Solyc07g052470.2.1	Tomato	cytosol	72.55	72.79
PGSC0003DMT400065519	Potato	cytosol	72.22	70.83
TraesCS2D01G224100.1	Wheat	cytosol	66.34	67.0
TraesCS2B01G244700.1	Wheat	cytosol	66.01	66.67
TraesCS2A01G219200.1	Wheat	cytosol	65.69	66.34
KRH08507	Soybean	cytosol	66.67	66.23
EER97312	Sorghum	cytosol	65.03	65.25
HORVU2Hr1G045350.3	Barley	cytosol	62.42	65.19
Os07t0528900-00	Rice	cytosol, extracellular, plasma membrane	22.88	63.06
GSMUA_Achr9P24850_001	Banana	cytosol	56.54	61.79
KRH70169	Soybean	cytosol	28.76	59.86
Zm00001d021664_P001	Maize	cytosol	58.5	50.28
KRH41917	Soybean	cytosol	45.42	45.72
KRH21567	Soybean	cytosol	44.12	44.41
KRH10761	Soybean	cytosol	44.12	44.41
KRH72168	Soybean	cytosol	43.79	43.93
KRH32862	Soybean	cytosol	43.79	43.79
KRH08461	Soybean	cytosol	44.12	41.93
KRH70119	Soybean	cytosol	43.46	41.82
KRH72169	Soybean	cytosol	45.75	41.79
KRH32861	Soybean	mitochondrion	44.77	41.27
KRG96271	Soybean	cytosol, golgi, mitochondrion	36.93	37.54
KRH68016	Soybean	cytosol	34.97	36.39
KRH28699	Soybean	cytosol	33.33	34.11
KRH76768	Soybean	cytosol	32.35	33.11
HORVU2Hr1G043130.15	Barley	cytosol	29.09	28.34
TraesCS2B01G238200.2	Wheat	cytosol	27.45	27.27
KRH43180	Soybean	cytosol	22.55	26.85
TraesCS2A01G213400.1	Wheat	cytosol	21.57	24.63
TraesCS2D01G219400.1	Wheat	cytosol	26.8	23.63
KRH59335	Soybean	cytosol	10.78	21.71

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	EntrezGene:100807404	MapMan:22.7.1.1	EMBL:ACUP02008417	EMBL:BT097225
UniProt:C6THU9	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G307600	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	GO:GO:0048278	InterPro:IPR000727	EnsemblPlants:KRH22542	ProteinID:KRH22542	ProteinID:KRH22542.1
PFAM:PF00804	PFAM:PF05739	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF153	SMART:SM00397
SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI0001B16864	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:40323937..40327786

Molecular Weight (calculated)

34534.7 Da

IEP (calculated)

7.628

GRAVY (calculated)

-0.514

Length

306 amino acids

Sequence
(BLAST)

001: MNDLLTDSFV GEASNGQPSR QSDIEMGQVP RSNSDMGMEA FNKQIHEADK QIDKLSVLLQ KLKEANEESK AVTKASSMKA IKKRMEKDID EVGKIAHGVK
101: TKIEAISRDN LSNRQKPGCE KGTGVDRARM NMTNALTKKF KDLMTEFQTL RQRIQDEYRE VVERRVITVT GTRPDDETID RLIETGNSEQ IFQRAILEAG
201: RGQIVNTVEE IQERHDAVKE IEKKLLDLHQ IYLDMAVLVD AQGEILDNIE SQVNNAVDHV QRGTSALQNA KKLQKNSRKW MCIAIIILLI IVAIIVVGVL
301: KPWKSS

Best Arabidopsis Sequence Match ( AT5G08080.1 )
(BLAST)

001: MNDLLKGSFE LPRGQSSREG DVELGEQQGG DQGLEDFFKK VQVIDKQYDK LDKLLKKLQA SHEESKSVTK APAMKAIKKT MEKDVDEVGS IARFIKGKLE
101: ELDRENLANR QKPGCAKGSG VDRSRTATTL SLKKKLKDKM AEFQVLRENI QQEYRDVVDR RVYTVTGERA DEDTIDELIE TGNSEQIFQK AIQEQGRGQV
201: MDTLAEIQER HDAVRDLEKK LLDLQQIFLD MAVLVDAQGE MLDNIESQVS SAVDHVQSGN TALQRAKSLQ KNSRKWMCIA IIILLIVVAV IVVGVLKPWK
301: NKSA

Arabidopsis Description

SYP132Syntaxin of plants 132 [Source:UniProtKB/TrEMBL;Acc:F4K9K2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.