Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 1
- cytosol 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH32861 | Soybean | mitochondrion | 93.73 | 94.58 |
| Solyc01g006950.2.1 | Tomato | nucleus | 65.97 | 73.67 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 70.75 | 73.15 |
| KRH72168 | Soybean | cytosol | 66.27 | 72.79 |
| PGSC0003DMT400054965 | Potato | cytosol | 65.07 | 72.67 |
| PGSC0003DMT400072325 | Potato | cytosol | 64.48 | 71.52 |
| CDY01061 | Canola | cytosol, plastid | 71.34 | 71.34 |
| Solyc10g081850.1.1 | Tomato | cytosol | 64.48 | 71.29 |
| KRH32862 | Soybean | cytosol | 65.07 | 71.24 |
| CDY70958 | Canola | cytosol | 70.75 | 71.17 |
| Bra001422.1-P | Field mustard | cytosol | 70.75 | 71.17 |
| CDX73851 | Canola | cytosol | 70.75 | 70.96 |
| CDY08492 | Canola | cytosol | 70.75 | 69.91 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 67.16 | 69.23 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 70.75 | 68.5 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 53.43 | 65.33 |
| Bra033436.1-P | Field mustard | cytosol | 65.67 | 64.33 |
| CDY23212 | Canola | cytosol | 65.67 | 64.14 |
| AT3G52400.1 | Thale cress | cytosol | 64.48 | 63.34 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 57.31 | 62.34 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 62.09 | 62.28 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 62.39 | 62.2 |
| KRH21567 | Soybean | cytosol | 56.12 | 61.84 |
| KRH41917 | Soybean | cytosol | 56.12 | 61.84 |
| KRH10761 | Soybean | cytosol | 55.52 | 61.18 |
| EER93336 | Sorghum | cytosol | 55.82 | 60.91 |
| Zm00001d034365_P001 | Maize | plasma membrane | 54.63 | 59.8 |
| Os03t0787000-01 | Rice | plasma membrane | 58.51 | 59.39 |
| KRG96271 | Soybean | cytosol, golgi, mitochondrion | 52.84 | 58.8 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 54.93 | 58.04 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 53.73 | 57.88 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 55.22 | 57.63 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 54.93 | 57.5 |
| KRH68016 | Soybean | cytosol | 49.85 | 56.8 |
| CDX95336 | Canola | cytosol | 17.61 | 56.19 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 40.0 | 52.55 |
| Zm00001d013115_P001 | Maize | cytosol | 20.3 | 46.58 |
| KRH22542 | Soybean | endoplasmic reticulum, extracellular, mitochondrion | 41.79 | 45.75 |
| KRH08507 | Soybean | cytosol | 41.49 | 45.13 |
| KRH26811 | Soybean | cytosol | 41.19 | 45.1 |
| KRH08461 | Soybean | cytosol | 42.69 | 44.41 |
| KRH70119 | Soybean | cytosol | 41.49 | 43.71 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 37.91 | 43.49 |
| KRH70169 | Soybean | cytosol | 17.61 | 40.14 |
| KRH76768 | Soybean | cytosol | 33.73 | 37.79 |
| KRH28699 | Soybean | cytosol | 33.73 | 37.79 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 15.52 | 33.55 |
| KRH43180 | Soybean | cytosol | 22.99 | 29.96 |
| KRH59335 | Soybean | cytosol | 13.43 | 29.61 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | EntrezGene:100809258 | MapMan:22.7.1.1 | EMBL:ACUP02001174 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_02G195400 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0006887 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048278 |
| UniProt:I1JGG9 | InterPro:IPR000727 | EnsemblPlants:KRH72169 | ProteinID:KRH72169 | ProteinID:KRH72169.1 | PFAM:PF00804 |
| PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI000233744F | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:36872648..36875320
Molecular Weight (calculated)
37281.1 Da
IEP (calculated)
7.348
GRAVY (calculated)
-0.623
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSGSFS RFRSDQSSPD RHHDIEMGAT ASSGGRGGEV NLDKFFEDVE GVKEELKELE GLAQSLRSSH EQSKTLHNAK AVRDLRARMD GDVSAALKKA
101: KLIKLKLEAL ERSNAANRNM PGCGPGSSSD RTRTSVVNGL KKKLKDAMES FNEIRQLVSS EYRETVQRRY FTVTGENPDD KTLDLLISTG ESETFLQKAI
201: QEQGRGRILD TITEIQERHD AVKEIEKNLK ELHQVFLDMT VLVQHQGEQL DDIESHVARA HSFVRTGAEQ LQTARKHQKN TRKWTCYCII LLLVIILFVV
301: LFTVKPWENS SSGGNGGGQP APAQTPPSPS PPVNA
101: KLIKLKLEAL ERSNAANRNM PGCGPGSSSD RTRTSVVNGL KKKLKDAMES FNEIRQLVSS EYRETVQRRY FTVTGENPDD KTLDLLISTG ESETFLQKAI
201: QEQGRGRILD TITEIQERHD AVKEIEKNLK ELHQVFLDMT VLVQHQGEQL DDIESHVARA HSFVRTGAEQ LQTARKHQKN TRKWTCYCII LLLVIILFVV
301: LFTVKPWENS SSGGNGGGQP APAQTPPSPS PPVNA
001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
Arabidopsis Description
SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.