CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044720.1.1	Tomato	nucleus	35.33	98.15
KRH23342	Soybean	endoplasmic reticulum	97.33	97.33
KRH47170	Soybean	endoplasmic reticulum	91.33	91.33
KRH44206	Soybean	nucleus	89.33	89.33
PGSC0003DMT400012339	Potato	cytosol	80.0	83.92
VIT_09s0002g02560.t01	Wine grape	cytosol	82.0	82.55
PGSC0003DMT400016607	Potato	cytosol	78.67	82.52
Solyc03g121330.2.1	Tomato	nucleus	78.0	81.82
PGSC0003DMT400006681	Potato	extracellular	78.0	81.82
VIT_04s0008g00790.t01	Wine grape	cytosol	76.0	79.17
KRH45415	Soybean	mitochondrion	36.0	77.14
Bra011106.1-P	Field mustard	cytosol	70.67	74.13
Bra039014.1-P	Field mustard	cytosol	70.67	74.13
CDY35881	Canola	cytosol	70.67	74.13
CDX82715	Canola	cytosol	70.0	73.43
CDY21652	Canola	cytosol	70.0	73.43
CDX81940	Canola	cytosol	70.0	73.43
Bra036710.1-P	Field mustard	cytosol	70.0	73.43
AT2G19730.2	Thale cress	cytosol	70.0	73.43
Os01t0706500-00	Rice	plastid	70.67	73.1
Os02t0821200-01	Rice	plastid	44.67	72.83
AT4G29410.1	Thale cress	cytosol	69.33	72.73
Bra010329.1-P	Field mustard	cytosol	69.33	72.73
Bra031093.1-P	Field mustard	cytosol	69.33	72.73
CDY14213	Canola	cytosol	69.33	72.73
KXG22440	Sorghum	cytosol	70.67	72.6
EES01347	Sorghum	cytosol	70.0	72.41
GSMUA_Achr1P05120_001	Banana	cytosol	71.33	72.3
Solyc06g062500.2.1	Tomato	endoplasmic reticulum, plastid	57.33	72.27
CDY62032	Canola	cytosol	68.67	72.03
Bra024145.1-P	Field mustard	cytosol	68.67	72.03
CDY30215	Canola	cytosol	68.67	72.03
Zm00001d009417_P006	Maize	cytosol	70.0	71.43
HORVU3Hr1G066430.1	Barley	cytosol	67.33	70.63
TraesCS3D01G253300.1	Wheat	cytosol	67.33	70.63
TraesCS3B01G284300.1	Wheat	cytosol	67.33	70.63
TraesCS3A01G252700.1	Wheat	cytosol, golgi	66.67	69.93
HORVU1Hr1G079370.1	Barley	cytosol, peroxisome, plastid	66.0	67.35
TraesCS1D01G368700.1	Wheat	nucleus	65.33	66.67
TraesCS1B01G380800.1	Wheat	golgi	65.33	66.67
CDY41134	Canola	cytosol	25.33	63.33
Bra033205.1-P	Field mustard	cytosol	25.33	63.33
CDY06809	Canola	extracellular	71.33	62.94
CDY43499	Canola	mitochondrion	71.33	61.85
TraesCS3A01G379600.1	Wheat	cytosol	44.0	61.11
GSMUA_Achr5P09610_001	Banana	plasma membrane	74.67	60.87
TraesCS2D01G587700.1	Wheat	cytosol, plastid	43.33	60.75
TraesCS5D01G549700.1	Wheat	cytosol	42.0	60.58
Os05t0541900-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	53.33	60.15
CDY03348	Canola	plastid	70.0	60.0
TraesCS7B01G324000.1	Wheat	plastid	40.67	58.65
TraesCS1A01G215000.1	Wheat	cytosol	42.0	58.33
TraesCS7B01G281500.1	Wheat	cytosol	43.33	57.52
TraesCS3B01G505000.1	Wheat	golgi	43.33	57.52
Zm00001d038865_P003	Maize	cytosol, mitochondrion, nucleus, plastid	70.67	56.08
GSMUA_Achr6P33480_001	Banana	nucleus	70.67	53.54
CDY48720	Canola	cytosol	70.0	51.72
TraesCS1A01G363700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	65.33	49.75
CDX91669	Canola	mitochondrion	21.33	49.23
GSMUA_Achr1P28120_001	Banana	mitochondrion	73.33	47.41
CDY47764	Canola	cytosol	54.0	41.33
TraesCS6D01G263800.1	Wheat	cytosol	46.67	40.23
TraesCS3D01G497400.1	Wheat	cytosol	44.67	38.51
TraesCS5A01G102300.1	Wheat	cytosol	43.33	37.14
Bra001548.1-P	Field mustard	nucleus	24.0	30.25
TraesCS6A01G220700.1	Wheat	cytosol	30.0	20.74

Protein Annotations

MapMan:17.1.2.1.29	Gene3D:3.30.390.110	EMBL:ACUP02009115	EnsemblPlantsGene:GLYMA_15G022700	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	UniProt:I1MCX7	EnsemblPlants:KRH09991	ProteinID:KRH09991	ProteinID:KRH09991.1
InterPro:L28e/Mak16	PFAM:PF01778	PANTHER:PTHR10544	PANTHER:PTHR10544:SF5	InterPro:Ribosomal_L28e	UniParc:UPI00023D29DA

Description

hypothetical protein

Coordinates

chr15:-:1770973..1773607

Molecular Weight (calculated)

16887.7 Da

IEP (calculated)

11.707

GRAVY (calculated)

-0.669

Length

150 amino acids

Sequence
(BLAST)

001: MATVPGQLIW EVVKKNNSFL VKEFGRGTQS VQFSREPNNL YNLNTFKYSG LANKKTVTVQ PAGKDQSVLL ATTKTKKQNK PAALLHKSVM KKEFRRMAKA
101: VQNQVADNYY RPDLKKAALA RLSAVNRSLR VAKSGVKKRN RQAVKVPSRK

Best Arabidopsis Sequence Match ( AT4G29410.2 )
(BLAST)

001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA

Arabidopsis Description

RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.