Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G215000.1 | Wheat | cytosol | 91.35 | 87.96 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 88.46 | 85.98 |
| TraesCS3B01G505000.1 | Wheat | golgi | 90.38 | 83.19 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 86.54 | 79.65 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 91.35 | 64.63 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 91.35 | 64.63 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 73.08 | 57.14 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 92.31 | 55.17 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 73.08 | 53.15 |
| KXG22440 | Sorghum | cytosol | 73.08 | 52.05 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 86.54 | 51.72 |
| Zm00001d009417_P006 | Maize | cytosol | 73.08 | 51.7 |
| CDX91669 | Canola | mitochondrion | 29.81 | 47.69 |
| Solyc03g121330.2.1 | Tomato | nucleus | 63.46 | 46.15 |
| PGSC0003DMT400006681 | Potato | extracellular | 63.46 | 46.15 |
| KRH45415 | Soybean | mitochondrion | 30.77 | 45.71 |
| PGSC0003DMT400016607 | Potato | cytosol | 62.5 | 45.45 |
| PGSC0003DMT400012339 | Potato | cytosol | 62.5 | 45.45 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 63.46 | 44.3 |
| AT2G19730.2 | Thale cress | cytosol | 59.62 | 43.36 |
| KRH47170 | Soybean | endoplasmic reticulum | 62.5 | 43.33 |
| KRH44206 | Soybean | nucleus | 62.5 | 43.33 |
| CDY30215 | Canola | cytosol | 58.65 | 42.66 |
| Bra010329.1-P | Field mustard | cytosol | 58.65 | 42.66 |
| Bra011106.1-P | Field mustard | cytosol | 58.65 | 42.66 |
| Bra024145.1-P | Field mustard | cytosol | 58.65 | 42.66 |
| CDY62032 | Canola | cytosol | 58.65 | 42.66 |
| CDY14213 | Canola | cytosol | 58.65 | 42.66 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 60.58 | 42.57 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 58.65 | 42.36 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 60.58 | 42.0 |
| KRH23342 | Soybean | endoplasmic reticulum | 60.58 | 42.0 |
| CDY35881 | Canola | cytosol | 57.69 | 41.96 |
| Bra039014.1-P | Field mustard | cytosol | 57.69 | 41.96 |
| Os02t0821200-01 | Rice | plastid | 36.54 | 41.3 |
| Bra036710.1-P | Field mustard | cytosol | 56.73 | 41.26 |
| AT4G29410.1 | Thale cress | cytosol | 56.73 | 41.26 |
| CDX82715 | Canola | cytosol | 56.73 | 41.26 |
| Bra031093.1-P | Field mustard | cytosol | 55.77 | 40.56 |
| CDX81940 | Canola | cytosol | 55.77 | 40.56 |
| CDY21652 | Canola | cytosol | 54.81 | 39.86 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 69.23 | 38.1 |
| CDY06809 | Canola | extracellular | 59.62 | 36.47 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 64.42 | 36.41 |
| CDY43499 | Canola | mitochondrion | 59.62 | 35.84 |
| CDY03348 | Canola | plastid | 56.73 | 33.71 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 60.58 | 31.82 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 34.62 | 30.25 |
| CDY48720 | Canola | cytosol | 56.73 | 29.06 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 63.46 | 28.45 |
| Bra001548.1-P | Field mustard | nucleus | 28.85 | 25.21 |
| CDY47764 | Canola | cytosol | 42.31 | 22.45 |
| Solyc12g044720.1.1 | Tomato | nucleus | 9.62 | 18.52 |
| CDY41134 | Canola | cytosol | 8.65 | 15.0 |
| Bra033205.1-P | Field mustard | cytosol | 8.65 | 15.0 |
Protein Annotations
| MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:L28e/Mak16 | PFAM:PF01778 |
| PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 | InterPro:Ribosomal_L28e | EnsemblPlantsGene:TraesCS5D01G549700 | EnsemblPlants:TraesCS5D01G549700.1 | SEG:seg |
Description
No Description!
Coordinates
chr5D:-:556578163..556578566
Molecular Weight (calculated)
11745.4 Da
IEP (calculated)
11.023
GRAVY (calculated)
-0.670
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTVPGSPVW ELVKKSKYFL IKQFGNSNTK VPFSKEPNNL YNVHSYKFLG LANSKTVAVQ PSAGEDKAVV LSTTKTKKQN TPTKLQHKTL MRKEFRKMAK
101: SVKN
101: SVKN
001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
Arabidopsis Description
RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.