Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006681 | Potato | extracellular | 92.31 | 92.31 |
| PGSC0003DMT400012339 | Potato | cytosol | 90.21 | 90.21 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 82.52 | 79.19 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 79.72 | 79.17 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 82.52 | 78.67 |
| KRH23342 | Soybean | endoplasmic reticulum | 81.82 | 78.0 |
| KRH47170 | Soybean | endoplasmic reticulum | 80.42 | 76.67 |
| KRH44206 | Soybean | nucleus | 80.42 | 76.67 |
| Bra024145.1-P | Field mustard | cytosol | 76.22 | 76.22 |
| Bra010329.1-P | Field mustard | cytosol | 75.52 | 75.52 |
| CDY14213 | Canola | cytosol | 75.52 | 75.52 |
| CDX81940 | Canola | cytosol | 74.83 | 74.83 |
| CDY62032 | Canola | cytosol | 74.83 | 74.83 |
| CDY30215 | Canola | cytosol | 74.83 | 74.83 |
| Bra011106.1-P | Field mustard | cytosol | 74.83 | 74.83 |
| AT2G19730.2 | Thale cress | cytosol | 74.83 | 74.83 |
| Bra039014.1-P | Field mustard | cytosol | 74.13 | 74.13 |
| CDY21652 | Canola | cytosol | 74.13 | 74.13 |
| Bra031093.1-P | Field mustard | cytosol | 74.13 | 74.13 |
| CDY35881 | Canola | cytosol | 74.13 | 74.13 |
| AT4G29410.1 | Thale cress | cytosol | 73.43 | 73.43 |
| Bra036710.1-P | Field mustard | cytosol | 73.43 | 73.43 |
| CDX82715 | Canola | cytosol | 73.43 | 73.43 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 74.13 | 71.62 |
| EES01347 | Sorghum | cytosol | 72.03 | 71.03 |
| Os01t0706500-00 | Rice | plastid | 72.03 | 71.03 |
| KXG22440 | Sorghum | cytosol | 71.33 | 69.86 |
| Zm00001d009417_P006 | Maize | cytosol | 70.63 | 68.71 |
| Os02t0821200-01 | Rice | plastid | 44.06 | 68.48 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 69.23 | 67.35 |
| HORVU3Hr1G066430.1 | Barley | cytosol | 67.13 | 67.13 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 67.13 | 67.13 |
| TraesCS3B01G284300.1 | Wheat | cytosol | 67.13 | 67.13 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 68.53 | 66.67 |
| TraesCS1B01G380800.1 | Wheat | golgi | 68.53 | 66.67 |
| TraesCS3A01G252700.1 | Wheat | cytosol, golgi | 66.43 | 66.43 |
| CDY06809 | Canola | extracellular | 75.52 | 63.53 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 46.85 | 62.62 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 45.45 | 62.5 |
| CDY43499 | Canola | mitochondrion | 75.52 | 62.43 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 46.85 | 62.04 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 57.34 | 61.65 |
| Bra033205.1-P | Field mustard | cytosol | 25.17 | 60.0 |
| KRH45415 | Soybean | mitochondrion | 29.37 | 60.0 |
| CDY03348 | Canola | plastid | 73.43 | 60.0 |
| CDY41134 | Canola | cytosol | 25.17 | 60.0 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 44.76 | 59.26 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 76.22 | 59.24 |
| TraesCS7B01G324000.1 | Wheat | plastid | 42.66 | 58.65 |
| TraesCS3B01G505000.1 | Wheat | golgi | 46.15 | 58.41 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 44.76 | 56.64 |
| CDX91669 | Canola | mitochondrion | 25.17 | 55.38 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 74.13 | 53.54 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 70.63 | 53.44 |
| CDY48720 | Canola | cytosol | 73.43 | 51.72 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 68.53 | 49.75 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 74.13 | 45.69 |
| CDY47764 | Canola | cytosol | 57.34 | 41.84 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 48.25 | 39.66 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 46.15 | 37.93 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 45.45 | 37.14 |
| Bra001548.1-P | Field mustard | nucleus | 27.97 | 33.61 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 27.97 | 18.43 |
Protein Annotations
| MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:L28e/Mak16 | UniProt:M1A7X7 |
| PFAM:PF01778 | EnsemblPlantsGene:PGSC0003DMG400006491 | PGSC:PGSC0003DMG400006491 | EnsemblPlants:PGSC0003DMT400016607 | PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 |
| InterPro:Ribosomal_L28e | UniParc:UPI0002948158 | : | : | : | : |
Description
Ribosomal protein L28 [Source:PGSC_GENE;Acc:PGSC0003DMG400006491]
Coordinates
chr12:+:51614137..51616433
Molecular Weight (calculated)
15833.3 Da
IEP (calculated)
11.376
GRAVY (calculated)
-0.627
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTVPGQLVW EIVKKNNAFL VKEFGNGSAG VVFSKEPNNL CNLHSYKHSG LANKKTVTIQ AGGKDQSVLL ATTKTKKQNK PSTLLNKSAM KKEFRRMAKA
101: VTNQVADNYY RPDLKKAALA RLSAVNRSLR VTKSGVKKRN RQS
101: VTNQVADNYY RPDLKKAALA RLSAVNRSLR VTKSGVKKRN RQS
001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
Arabidopsis Description
RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.