Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22440 | Sorghum | cytosol | 73.02 | 94.52 |
| Zm00001d009417_P006 | Maize | cytosol | 70.37 | 90.48 |
| Os02t0821200-01 | Rice | plastid | 43.92 | 90.22 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 60.32 | 77.55 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 59.79 | 76.87 |
| TraesCS1B01G380800.1 | Wheat | golgi | 59.26 | 76.19 |
| Solyc12g044720.1.1 | Tomato | nucleus | 21.69 | 75.93 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 55.03 | 72.22 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 50.79 | 72.18 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 56.08 | 70.67 |
| Solyc03g121330.2.1 | Tomato | nucleus | 53.44 | 70.63 |
| PGSC0003DMT400016607 | Potato | cytosol | 53.44 | 70.63 |
| PGSC0003DMT400012339 | Potato | cytosol | 53.44 | 70.63 |
| PGSC0003DMT400006681 | Potato | extracellular | 53.44 | 70.63 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 55.56 | 70.47 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 40.21 | 70.37 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 39.68 | 70.09 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 54.5 | 69.59 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 38.1 | 69.23 |
| KRH47170 | Soybean | endoplasmic reticulum | 54.5 | 68.67 |
| KRH44206 | Soybean | nucleus | 54.5 | 68.67 |
| CDY35881 | Canola | cytosol | 51.85 | 68.53 |
| Bra039014.1-P | Field mustard | cytosol | 51.85 | 68.53 |
| AT2G19730.2 | Thale cress | cytosol | 51.85 | 68.53 |
| Bra011106.1-P | Field mustard | cytosol | 51.85 | 68.53 |
| TraesCS3B01G505000.1 | Wheat | golgi | 40.74 | 68.14 |
| KRH23342 | Soybean | endoplasmic reticulum | 53.97 | 68.0 |
| AT4G29410.1 | Thale cress | cytosol | 51.32 | 67.83 |
| Bra031093.1-P | Field mustard | cytosol | 51.32 | 67.83 |
| Bra036710.1-P | Field mustard | cytosol | 51.32 | 67.83 |
| CDX81940 | Canola | cytosol | 51.32 | 67.83 |
| CDY21652 | Canola | cytosol | 51.32 | 67.83 |
| CDX82715 | Canola | cytosol | 51.32 | 67.83 |
| TraesCS7B01G324000.1 | Wheat | plastid | 37.04 | 67.31 |
| Bra010329.1-P | Field mustard | cytosol | 50.79 | 67.13 |
| CDY14213 | Canola | cytosol | 50.79 | 67.13 |
| CDY62032 | Canola | cytosol | 50.26 | 66.43 |
| Bra024145.1-P | Field mustard | cytosol | 50.26 | 66.43 |
| CDY30215 | Canola | cytosol | 50.26 | 66.43 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 37.57 | 65.74 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 39.15 | 65.49 |
| CDY06809 | Canola | extracellular | 53.44 | 59.41 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 57.14 | 58.7 |
| CDY03348 | Canola | plastid | 53.97 | 58.29 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 36.51 | 57.98 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 60.32 | 57.87 |
| CDY43499 | Canola | mitochondrion | 52.38 | 57.23 |
| KRH45415 | Soybean | mitochondrion | 20.63 | 55.71 |
| CDY41134 | Canola | cytosol | 16.93 | 53.33 |
| Bra033205.1-P | Field mustard | cytosol | 16.93 | 53.33 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 55.03 | 52.53 |
| CDX91669 | Canola | mitochondrion | 17.46 | 50.77 |
| CDY48720 | Canola | cytosol | 52.91 | 49.26 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 58.73 | 47.84 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 42.86 | 46.55 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 41.8 | 45.4 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 40.74 | 44.0 |
| CDY47764 | Canola | cytosol | 40.74 | 39.29 |
| Bra001548.1-P | Field mustard | nucleus | 21.16 | 33.61 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 26.45 | 23.04 |
Protein Annotations
| EntrezGene:100284901 | MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | UniProt:A0A1D6MBF3 | ProteinID:AQK88105.1 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:L28e/Mak16 | PFAM:PF01778 | PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 | InterPro:Ribosomal_L28e |
| UniParc:UPI00084257CD | EnsemblPlantsGene:Zm00001d038865 | EnsemblPlants:Zm00001d038865_P003 | EnsemblPlants:Zm00001d038865_T003 | SEG:seg | : |
Description
60S ribosomal protein L28-1
Coordinates
chr6:-:166071467..166073407
Molecular Weight (calculated)
21421.2 Da
IEP (calculated)
12.003
GRAVY (calculated)
-0.711
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MQDLPQPPPQ PRNRARRRRG TSSPVDLNLI IRSVRFGILI VCRRREMATV PGDLIWQVVR KNNSFLVKQF GNGNAKVQFT KEPNNLYNIH SFKHSGLANK
101: KTVTIQPAAK DSAVVLSTTK TKKQNAPAKL SHKSVMRKEF RKMAKAVKNQ VSDNYYRPDL TKPALARLSS VYRSLQVAKS GVKKKNRQS
101: KTVTIQPAAK DSAVVLSTTK TKKQNAPAKL SHKSVMRKEF RKMAKAVKNQ VSDNYYRPDL TKPALARLSS VYRSLQVAKS GVKKKNRQS
001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
Arabidopsis Description
RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.