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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 2
  • nucleus 1
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH44206 Soybean nucleus 97.33 97.33
Solyc12g044720.1.1 Tomato nucleus 33.33 92.59
KRH09991 Soybean cytosol, endoplasmic reticulum 91.33 91.33
KRH23342 Soybean endoplasmic reticulum 90.0 90.0
VIT_09s0002g02560.t01 Wine grape cytosol 83.33 83.89
PGSC0003DMT400012339 Potato cytosol 79.33 83.22
Solyc03g121330.2.1 Tomato nucleus 78.67 82.52
PGSC0003DMT400006681 Potato extracellular 78.0 81.82
PGSC0003DMT400016607 Potato cytosol 76.67 80.42
VIT_04s0008g00790.t01 Wine grape cytosol 75.33 78.47
Bra011106.1-P Field mustard cytosol 71.33 74.83
Os01t0706500-00 Rice plastid 71.33 73.79
EES01347 Sorghum cytosol 71.33 73.79
Os02t0821200-01 Rice plastid 44.67 72.83
CDY35881 Canola cytosol 69.33 72.73
CDY62032 Canola cytosol 69.33 72.73
CDY30215 Canola cytosol 69.33 72.73
CDY14213 Canola cytosol 69.33 72.73
Bra039014.1-P Field mustard cytosol 69.33 72.73
Bra010329.1-P Field mustard cytosol 69.33 72.73
AT2G19730.2 Thale cress cytosol 69.33 72.73
GSMUA_Achr1P05120_001 Banana cytosol 71.33 72.3
AT4G29410.1 Thale cress cytosol 68.67 72.03
Bra036710.1-P Field mustard cytosol 68.67 72.03
Bra024145.1-P Field mustard cytosol 68.67 72.03
CDX81940 Canola cytosol 68.67 72.03
CDX82715 Canola cytosol 68.67 72.03
CDY21652 Canola cytosol 68.67 72.03
KRH45415 Soybean mitochondrion 33.33 71.43
Bra031093.1-P Field mustard cytosol 68.0 71.33
Zm00001d009417_P006 Maize cytosol 69.33 70.75
Solyc06g062500.2.1 Tomato endoplasmic reticulum, plastid 56.0 70.59
KXG22440 Sorghum cytosol 68.67 70.55
TraesCS3D01G253300.1 Wheat cytosol 66.67 69.93
TraesCS3B01G284300.1 Wheat cytosol 66.67 69.93
HORVU3Hr1G066430.1 Barley cytosol 66.67 69.93
TraesCS3A01G252700.1 Wheat cytosol, golgi 66.0 69.23
HORVU1Hr1G079370.1 Barley cytosol, peroxisome, plastid 66.0 67.35
TraesCS1D01G368700.1 Wheat nucleus 65.33 66.67
TraesCS1B01G380800.1 Wheat golgi 65.33 66.67
CDY06809 Canola extracellular 72.0 63.53
TraesCS3A01G379600.1 Wheat cytosol 45.33 62.96
TraesCS2D01G587700.1 Wheat cytosol, plastid 44.67 62.62
TraesCS5D01G549700.1 Wheat cytosol 43.33 62.5
TraesCS7B01G324000.1 Wheat plastid 43.33 62.5
CDY43499 Canola mitochondrion 72.0 62.43
GSMUA_Achr5P09610_001 Banana plasma membrane 74.67 60.87
Os05t0541900-01 Rice cytosol, golgi, nucleus, plasma membrane, plastid 53.33 60.15
Bra033205.1-P Field mustard cytosol 24.0 60.0
CDY41134 Canola cytosol 24.0 60.0
TraesCS3B01G505000.1 Wheat golgi 44.67 59.29
CDY03348 Canola plastid 68.67 58.86
TraesCS1A01G215000.1 Wheat cytosol 42.0 58.33
TraesCS7B01G281500.1 Wheat cytosol 43.33 57.52
Zm00001d038865_P003 Maize cytosol, mitochondrion, nucleus, plastid 68.67 54.5
GSMUA_Achr6P33480_001 Banana nucleus 70.67 53.54
CDY48720 Canola cytosol 68.67 50.74
TraesCS1A01G363700.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 65.33 49.75
CDX91669 Canola mitochondrion 21.33 49.23
GSMUA_Achr1P28120_001 Banana mitochondrion 73.33 47.41
TraesCS6D01G263800.1 Wheat cytosol 47.33 40.8
CDY47764 Canola cytosol 52.0 39.8
TraesCS3D01G497400.1 Wheat cytosol 45.33 39.08
TraesCS5A01G102300.1 Wheat cytosol 44.0 37.71
Bra001548.1-P Field mustard nucleus 26.67 33.61
TraesCS6A01G220700.1 Wheat cytosol 29.33 20.28
Protein Annotations
EntrezGene:100499921MapMan:17.1.2.1.29Gene3D:3.30.390.110EMBL:ACUP02004138EMBL:BT090120UniProt:C6SY73
EnsemblPlantsGene:GLYMA_07G012800GO:GO:0003674GO:GO:0003735GO:GO:0005198GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0019538GO:GO:0022625EnsemblPlants:KRH47170
ProteinID:KRH47170ProteinID:KRH47170.1InterPro:L28e/Mak16PFAM:PF01778PANTHER:PTHR10544PANTHER:PTHR10544:SF5
InterPro:Ribosomal_L28eUniParc:UPI0001B15694::::
Description
hypothetical protein
Coordinates
chr7:+:1002165..1004266
Molecular Weight (calculated)
16889.7 Da
IEP (calculated)
11.407
GRAVY (calculated)
-0.654
Length
150 amino acids
Sequence
(BLAST)
001: MATVPGQLVW EIVKKNNSFL VKQFGRGTQS VEFSRESNNL YNLNSFKYSG LANKKTVTVQ PEGKDQAVLL ATTKTKKQNK PAALLHKSVM KKEFRRMAKA
101: VENQVAENYY RPDLKKAALA RLSAVHRSLK VAKSGVKKRN RQAVKVASRK
Best Arabidopsis Sequence Match ( AT4G29410.2 )
(BLAST)
001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
Arabidopsis Description
RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.