Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH45415 | Soybean | mitochondrion | 22.69 | 38.57 |
| Bra011106.1-P | Field mustard | cytosol | 42.86 | 35.66 |
| Bra010329.1-P | Field mustard | cytosol | 42.02 | 34.97 |
| Bra024145.1-P | Field mustard | cytosol | 42.02 | 34.97 |
| AT4G29410.1 | Thale cress | cytosol | 41.18 | 34.27 |
| Bra031093.1-P | Field mustard | cytosol | 40.34 | 33.57 |
| Bra036710.1-P | Field mustard | cytosol | 39.5 | 32.87 |
| Bra039014.1-P | Field mustard | cytosol | 39.5 | 32.87 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 29.41 | 32.71 |
| TraesCS7B01G324000.1 | Wheat | plastid | 27.73 | 31.73 |
| CDY06809 | Canola | extracellular | 44.54 | 31.18 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 27.73 | 30.56 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 25.21 | 28.85 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 31.93 | 28.57 |
| TraesCS3B01G505000.1 | Wheat | golgi | 26.89 | 28.32 |
| PGSC0003DMT400016607 | Potato | cytosol | 33.61 | 27.97 |
| PGSC0003DMT400006681 | Potato | extracellular | 33.61 | 27.97 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 25.21 | 27.78 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 26.05 | 27.43 |
| Solyc03g121330.2.1 | Tomato | nucleus | 32.77 | 27.27 |
| Os01t0706500-00 | Rice | plastid | 32.77 | 26.9 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 33.61 | 26.85 |
| KRH44206 | Soybean | nucleus | 33.61 | 26.67 |
| KRH47170 | Soybean | endoplasmic reticulum | 33.61 | 26.67 |
| PGSC0003DMT400012339 | Potato | cytosol | 31.93 | 26.57 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 31.93 | 26.39 |
| EES01347 | Sorghum | cytosol | 31.93 | 26.21 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 31.93 | 25.85 |
| TraesCS1B01G380800.1 | Wheat | golgi | 31.93 | 25.85 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 31.93 | 25.85 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 31.93 | 25.68 |
| KXG22440 | Sorghum | cytosol | 31.09 | 25.34 |
| TraesCS3B01G284300.1 | Wheat | cytosol | 30.25 | 25.17 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 30.25 | 25.17 |
| TraesCS3A01G252700.1 | Wheat | cytosol, golgi | 30.25 | 25.17 |
| HORVU3Hr1G066430.1 | Barley | cytosol | 30.25 | 25.17 |
| Zm00001d009417_P006 | Maize | cytosol | 31.09 | 25.17 |
| KRH23342 | Soybean | endoplasmic reticulum | 30.25 | 24.0 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 30.25 | 24.0 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 34.45 | 22.28 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 36.97 | 22.22 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 31.09 | 21.26 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 33.61 | 21.16 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 31.09 | 21.14 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 34.45 | 20.81 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 37.82 | 19.4 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 27.73 | 18.97 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 5.04 | 5.04 |
| Bra033205.1-P | Field mustard | cytosol | 2.52 | 5.0 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 8.4 | 4.61 |
| Os02t0821200-01 | Rice | plastid | 1.68 | 2.17 |
| Solyc12g044720.1.1 | Tomato | nucleus | 0.84 | 1.85 |
Protein Annotations
| MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | EnsemblPlantsGene:Bra001548 | EnsemblPlants:Bra001548.1 | EnsemblPlants:Bra001548.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:L28e/Mak16 | UniProt:M4CBG8 | PFAM:PF01778 | PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 |
| InterPro:Ribosomal_L28e | UniParc:UPI000254096C | SEG:seg | : | : | : |
Description
AT4G29410 (E=1e-022) | 60S ribosomal protein L28 (RPL28C)
Coordinates
chrA03:-:16969937..16974409
Molecular Weight (calculated)
13096.5 Da
IEP (calculated)
5.834
GRAVY (calculated)
-0.390
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MRAKKRVCTE QSGGDGEDSN DLSPLDTNLS CFTNTPILLY QGTSLLLSSI PPLSSSSTCE EIEMATVPGQ LVWEIVKRNN CFLVKQFGRG NAKVQFSKES
101: NNLCNLNSYK HSNDIYSGL
101: NNLCNLNSYK HSNDIYSGL
001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
Arabidopsis Description
RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.