CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0706500-00	Rice	plastid	93.79	93.79
HORVU3Hr1G066430.1	Barley	cytosol	87.59	88.81
TraesCS3D01G253300.1	Wheat	cytosol	87.59	88.81
TraesCS3B01G284300.1	Wheat	cytosol	87.59	88.81
TraesCS3A01G252700.1	Wheat	cytosol, golgi	86.9	88.11
KXG22440	Sorghum	cytosol	88.28	87.67
Solyc12g044720.1.1	Tomato	nucleus	29.66	79.63
PGSC0003DMT400006681	Potato	extracellular	73.79	74.83
PGSC0003DMT400012339	Potato	cytosol	73.79	74.83
Solyc03g121330.2.1	Tomato	nucleus	73.1	74.13
VIT_09s0002g02560.t01	Wine grape	cytosol	75.86	73.83
GSMUA_Achr1P05120_001	Banana	cytosol	73.79	72.3
PGSC0003DMT400016607	Potato	cytosol	71.03	72.03
VIT_04s0008g00790.t01	Wine grape	cytosol	71.03	71.53
KRH47170	Soybean	endoplasmic reticulum	73.79	71.33
KRH44206	Soybean	nucleus	73.1	70.67
KRH09991	Soybean	cytosol, endoplasmic reticulum	72.41	70.0
Bra011106.1-P	Field mustard	cytosol	68.28	69.23
Bra010329.1-P	Field mustard	cytosol	68.28	69.23
CDY14213	Canola	cytosol	68.28	69.23
AT2G19730.2	Thale cress	cytosol	68.28	69.23
KRH23342	Soybean	endoplasmic reticulum	71.03	68.67
CDY62032	Canola	cytosol	67.59	68.53
Bra024145.1-P	Field mustard	cytosol	67.59	68.53
Bra031093.1-P	Field mustard	cytosol	67.59	68.53
Bra036710.1-P	Field mustard	cytosol	67.59	68.53
CDY30215	Canola	cytosol	67.59	68.53
CDY21652	Canola	cytosol	67.59	68.53
CDX82715	Canola	cytosol	67.59	68.53
CDX81940	Canola	cytosol	67.59	68.53
AT4G29410.1	Thale cress	cytosol	66.9	67.83
CDY35881	Canola	cytosol	66.9	67.83
Bra039014.1-P	Field mustard	cytosol	66.9	67.83
GSMUA_Achr5P09610_001	Banana	plasma membrane	77.24	60.87
Solyc06g062500.2.1	Tomato	endoplasmic reticulum, plastid	49.66	60.5
CDY06809	Canola	extracellular	68.97	58.82
CDY43499	Canola	mitochondrion	68.97	57.8
KRH45415	Soybean	mitochondrion	27.59	57.14
CDY03348	Canola	plastid	67.59	56.0
CDY41134	Canola	cytosol	22.76	55.0
Bra033205.1-P	Field mustard	cytosol	22.76	55.0
GSMUA_Achr6P33480_001	Banana	nucleus	73.1	53.54
CDX91669	Canola	mitochondrion	22.07	49.23
CDY48720	Canola	cytosol	67.59	48.28
GSMUA_Achr1P28120_001	Banana	mitochondrion	76.55	47.84
CDY47764	Canola	cytosol	54.48	40.31
Bra001548.1-P	Field mustard	nucleus	26.21	31.93

Protein Annotations

MapMan:17.1.2.1.29	Gene3D:3.30.390.110	EntrezGene:8059160	UniProt:C5XHM7	EnsemblPlants:EES01347	ProteinID:EES01347
ProteinID:EES01347.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:L28e/Mak16
PFAM:PF01778	PANTHER:PTHR10544	PANTHER:PTHR10544:SF5	InterPro:Ribosomal_L28e	EnsemblPlantsGene:SORBI_3003G272500	UniParc:UPI0001A847BE
RefSeq:XP_002456227.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:60876973..60879468

Molecular Weight (calculated)

16223.7 Da

IEP (calculated)

11.316

GRAVY (calculated)

-0.734

Length

145 amino acids

Sequence
(BLAST)

001: MATVPDSLVW QIVRKNNSFL IKQFGNGNAK VQFSKEPNNL YNVHSYKHSG LANKKTVTVQ PASGKEAAVV LSTTKTKKQN KPASLHHKSV MRKEFRKMAK
101: AVKNQVGDNY YRPDLTKPAL ARLSAVYRSL QVAKSGVKKK NRQAN

Best Arabidopsis Sequence Match ( AT2G19730.2 )
(BLAST)

001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA

Arabidopsis Description

RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.