Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031093.1-P | Field mustard | cytosol | 98.6 | 98.6 |
| CDX82715 | Canola | cytosol | 97.2 | 97.2 |
| CDY21652 | Canola | cytosol | 97.2 | 97.2 |
| CDY35881 | Canola | cytosol | 96.5 | 96.5 |
| AT2G19730.2 | Thale cress | cytosol | 91.61 | 91.61 |
| CDY14213 | Canola | cytosol | 90.91 | 90.91 |
| CDY62032 | Canola | cytosol | 90.21 | 90.21 |
| CDY30215 | Canola | cytosol | 89.51 | 89.51 |
| CDY03348 | Canola | plastid | 96.5 | 78.86 |
| Solyc12g044720.1.1 | Tomato | nucleus | 28.67 | 75.93 |
| CDY06809 | Canola | extracellular | 90.21 | 75.88 |
| PGSC0003DMT400016607 | Potato | cytosol | 74.83 | 74.83 |
| CDY43499 | Canola | mitochondrion | 90.21 | 74.57 |
| PGSC0003DMT400006681 | Potato | extracellular | 73.43 | 73.43 |
| Solyc03g121330.2.1 | Tomato | nucleus | 73.43 | 73.43 |
| CDY41134 | Canola | cytosol | 30.77 | 73.33 |
| PGSC0003DMT400012339 | Potato | cytosol | 72.73 | 72.73 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 72.73 | 72.22 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 74.13 | 71.14 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 73.43 | 70.0 |
| KRH23342 | Soybean | endoplasmic reticulum | 72.03 | 68.67 |
| KRH47170 | Soybean | endoplasmic reticulum | 72.03 | 68.67 |
| CDY48720 | Canola | cytosol | 97.2 | 68.47 |
| KRH44206 | Soybean | nucleus | 71.33 | 68.0 |
| EES01347 | Sorghum | cytosol | 68.53 | 67.59 |
| Os01t0706500-00 | Rice | plastid | 68.53 | 67.59 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 69.93 | 67.57 |
| KXG22440 | Sorghum | cytosol | 68.53 | 67.12 |
| Zm00001d009417_P006 | Maize | cytosol | 67.83 | 65.99 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 65.73 | 65.73 |
| TraesCS3A01G252700.1 | Wheat | cytosol, golgi | 65.73 | 65.73 |
| TraesCS3B01G284300.1 | Wheat | cytosol | 65.73 | 65.73 |
| HORVU3Hr1G066430.1 | Barley | cytosol | 65.73 | 65.73 |
| CDX91669 | Canola | mitochondrion | 27.97 | 61.54 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 62.94 | 61.22 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 62.94 | 61.22 |
| TraesCS1B01G380800.1 | Wheat | golgi | 62.24 | 60.54 |
| Os02t0821200-01 | Rice | plastid | 38.46 | 59.78 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 48.25 | 57.98 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 43.36 | 57.94 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 53.85 | 57.89 |
| KRH45415 | Soybean | mitochondrion | 27.97 | 57.14 |
| TraesCS7B01G324000.1 | Wheat | plastid | 40.56 | 55.77 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 40.56 | 55.77 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 41.96 | 55.56 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 71.33 | 55.43 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 40.56 | 53.7 |
| TraesCS3B01G505000.1 | Wheat | golgi | 41.96 | 53.1 |
| CDY47764 | Canola | cytosol | 72.03 | 52.55 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 41.26 | 52.21 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 67.83 | 51.32 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 69.23 | 50.0 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 62.94 | 45.69 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 71.33 | 43.97 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 44.76 | 36.78 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 43.36 | 35.63 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 43.36 | 35.43 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 25.17 | 16.59 |
Protein Annotations
| MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | GO:A0A078CYN9 | EnsemblPlants:CDX81940 | ProteinID:CDX81940 | ProteinID:CDX81940.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00136903001 | InterPro:L28e/Mak16 | PFAM:PF01778 | PANTHER:PTHR10544 |
| PANTHER:PTHR10544:SF5 | InterPro:Ribosomal_L28e | UniParc:UPI0004EEDBB6 | : | : | : |
Description
BnaC08g36610D
Coordinates
chrLK031826:+:1579964..1581000
Molecular Weight (calculated)
15970.5 Da
IEP (calculated)
11.214
GRAVY (calculated)
-0.553
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVPGQLIW EIVKTNNCFL VKQFGRGNAK VQFSKETNNL CNLNSYKHSG LANKKTVTIQ AADKEQGVVL ATTKTKKQNK PKVSVNKSIL KKEFSRMSKA
101: VANQVVDNYY RPDLKKFALA RLSVISKSLR VAKSGAKQRN RQA
101: VANQVVDNYY RPDLKKFALA RLSVISKSLR VAKSGAKQRN RQA
001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
Arabidopsis Description
RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.