Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82715 | Canola | cytosol | 80.57 | 98.6 |
| CDY35881 | Canola | cytosol | 80.0 | 97.9 |
| CDX81940 | Canola | cytosol | 78.86 | 96.5 |
| CDY21652 | Canola | cytosol | 77.71 | 95.1 |
| AT2G19730.2 | Thale cress | cytosol | 73.71 | 90.21 |
| CDY14213 | Canola | cytosol | 73.71 | 90.21 |
| CDY30215 | Canola | cytosol | 73.14 | 89.51 |
| CDY62032 | Canola | cytosol | 73.14 | 89.51 |
| CDY06809 | Canola | extracellular | 77.71 | 80.0 |
| CDY43499 | Canola | mitochondrion | 77.14 | 78.03 |
| Solyc12g044720.1.1 | Tomato | nucleus | 22.86 | 74.07 |
| PGSC0003DMT400006681 | Potato | extracellular | 60.0 | 73.43 |
| PGSC0003DMT400016607 | Potato | cytosol | 60.0 | 73.43 |
| PGSC0003DMT400012339 | Potato | cytosol | 59.43 | 72.73 |
| Solyc03g121330.2.1 | Tomato | nucleus | 59.43 | 72.73 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 59.43 | 72.22 |
| CDY48720 | Canola | cytosol | 82.86 | 71.43 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 60.0 | 70.47 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 60.0 | 70.0 |
| CDY41134 | Canola | cytosol | 24.0 | 70.0 |
| KRH23342 | Soybean | endoplasmic reticulum | 58.86 | 68.67 |
| KRH47170 | Soybean | endoplasmic reticulum | 58.86 | 68.67 |
| KRH44206 | Soybean | nucleus | 58.29 | 68.0 |
| EES01347 | Sorghum | cytosol | 56.0 | 67.59 |
| Os01t0706500-00 | Rice | plastid | 56.0 | 67.59 |
| KXG22440 | Sorghum | cytosol | 56.0 | 67.12 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 56.0 | 66.22 |
| Zm00001d009417_P006 | Maize | cytosol | 55.43 | 65.99 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 53.71 | 65.73 |
| TraesCS3A01G252700.1 | Wheat | cytosol, golgi | 53.71 | 65.73 |
| TraesCS3B01G284300.1 | Wheat | cytosol | 53.71 | 65.73 |
| HORVU3Hr1G066430.1 | Barley | cytosol | 53.71 | 65.73 |
| CDX91669 | Canola | mitochondrion | 22.86 | 61.54 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 51.43 | 61.22 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 51.43 | 61.22 |
| TraesCS1B01G380800.1 | Wheat | golgi | 50.86 | 60.54 |
| Os02t0821200-01 | Rice | plastid | 31.43 | 59.78 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 36.0 | 58.88 |
| KRH45415 | Soybean | mitochondrion | 23.43 | 58.57 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 39.43 | 57.98 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 44.0 | 57.89 |
| TraesCS7B01G324000.1 | Wheat | plastid | 33.71 | 56.73 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 33.71 | 56.73 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 34.86 | 56.48 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 58.29 | 55.43 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 33.71 | 54.63 |
| TraesCS3B01G505000.1 | Wheat | golgi | 34.86 | 53.98 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 58.29 | 53.97 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 34.29 | 53.1 |
| CDY47764 | Canola | cytosol | 57.71 | 51.53 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 56.0 | 49.49 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 53.71 | 47.72 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 60.57 | 45.69 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 37.71 | 37.93 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 37.14 | 37.36 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 37.14 | 37.14 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 22.86 | 18.43 |
Protein Annotations
| MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | GO:A0A078EUU5 | EnsemblPlants:CDY03348 | ProteinID:CDY03348 | ProteinID:CDY03348.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00115964001 | InterPro:L28e/Mak16 | PFAM:PF01778 | PANTHER:PTHR10544 |
| PANTHER:PTHR10544:SF5 | InterPro:Ribosomal_L28e | UniParc:UPI0004EEF442 | : | : | : |
Description
BnaC09g10000D
Coordinates
chrLK031942:-:934557..936165
Molecular Weight (calculated)
19384.7 Da
IEP (calculated)
11.102
GRAVY (calculated)
-0.387
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVAFSIFNS GATIKPESSL SLSLSAKFHG LEMATVPGQL IWEIVKSNNC FLVKQFGRGN AKVQFSKEQN NLCNLNSYKH SGLANKKTVT IQPADKEQGV
101: VLATTKTKKQ NKPKVSVNKS ILKKEFPRMS KAVANQVVDN YYRPDLKKFA LARLSVISKS IRVAKSGAKQ RNRQA
101: VLATTKTKKQ NKPKVSVNKS ILKKEFPRMS KAVANQVVDN YYRPDLKKFA LARLSVISKS IRVAKSGAKQ RNRQA
001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
Arabidopsis Description
RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.