Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14213 | Canola | cytosol | 81.76 | 97.2 |
| CDY30215 | Canola | cytosol | 81.76 | 97.2 |
| CDY62032 | Canola | cytosol | 81.18 | 96.5 |
| AT4G29410.1 | Thale cress | cytosol | 77.65 | 92.31 |
| CDY35881 | Canola | cytosol | 77.06 | 91.61 |
| CDX82715 | Canola | cytosol | 76.47 | 90.91 |
| CDY21652 | Canola | cytosol | 76.47 | 90.91 |
| CDX81940 | Canola | cytosol | 75.88 | 90.21 |
| CDY43499 | Canola | mitochondrion | 87.06 | 85.55 |
| CDY41134 | Canola | cytosol | 27.65 | 78.33 |
| Solyc12g044720.1.1 | Tomato | nucleus | 24.71 | 77.78 |
| CDY03348 | Canola | plastid | 80.0 | 77.71 |
| PGSC0003DMT400012339 | Potato | cytosol | 63.53 | 75.52 |
| PGSC0003DMT400006681 | Potato | extracellular | 63.53 | 75.52 |
| PGSC0003DMT400016607 | Potato | cytosol | 63.53 | 75.52 |
| Solyc03g121330.2.1 | Tomato | nucleus | 62.94 | 74.83 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 62.35 | 73.61 |
| KRH47170 | Soybean | endoplasmic reticulum | 63.53 | 72.0 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 62.94 | 71.81 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 62.94 | 71.33 |
| KRH44206 | Soybean | nucleus | 62.94 | 71.33 |
| KRH23342 | Soybean | endoplasmic reticulum | 61.76 | 70.0 |
| EES01347 | Sorghum | cytosol | 58.82 | 68.97 |
| Os01t0706500-00 | Rice | plastid | 58.82 | 68.97 |
| KXG22440 | Sorghum | cytosol | 58.82 | 68.49 |
| Zm00001d009417_P006 | Maize | cytosol | 58.24 | 67.35 |
| TraesCS3B01G284300.1 | Wheat | cytosol | 56.47 | 67.13 |
| HORVU3Hr1G066430.1 | Barley | cytosol | 56.47 | 67.13 |
| TraesCS3A01G252700.1 | Wheat | cytosol, golgi | 56.47 | 67.13 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 56.47 | 67.13 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 57.65 | 66.22 |
| CDY48720 | Canola | cytosol | 77.06 | 64.53 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 54.71 | 63.27 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 54.71 | 63.27 |
| Os02t0821200-01 | Rice | plastid | 34.12 | 63.04 |
| TraesCS1B01G380800.1 | Wheat | golgi | 54.12 | 62.59 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 38.82 | 61.68 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 42.94 | 61.34 |
| TraesCS7B01G324000.1 | Wheat | plastid | 37.06 | 60.58 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 47.06 | 60.15 |
| KRH45415 | Soybean | mitochondrion | 24.71 | 60.0 |
| CDX91669 | Canola | mitochondrion | 22.94 | 60.0 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 36.47 | 59.62 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 37.65 | 59.26 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 36.47 | 57.41 |
| TraesCS3B01G505000.1 | Wheat | golgi | 37.65 | 56.64 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 37.06 | 55.75 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 60.0 | 55.43 |
| CDY47764 | Canola | cytosol | 63.53 | 55.1 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 59.41 | 53.44 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 57.06 | 48.99 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 55.29 | 47.72 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 62.94 | 46.12 |
| Bra001548.1-P | Field mustard | nucleus | 31.18 | 44.54 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 40.59 | 39.66 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 40.0 | 39.08 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 39.41 | 38.29 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 21.76 | 17.05 |
Protein Annotations
| MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | GO:A0A078F1Q8 | EnsemblPlants:CDY06809 | ProteinID:CDY06809 | ProteinID:CDY06809.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00123051001 | InterPro:L28e/Mak16 | PFAM:PF01778 | PANTHER:PTHR10544 |
| PANTHER:PTHR10544:SF5 | InterPro:Ribosomal_L28e | SignalP:SignalP-noTM | UniParc:UPI0004EF415B | SEG:seg | : |
Description
BnaC01g09080D
Coordinates
chrLK031973:+:406589..408896
Molecular Weight (calculated)
18936.3 Da
IEP (calculated)
10.967
GRAVY (calculated)
-0.425
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MCRVFQMLCL LSSIPPLSSS SICEEIEMAT VPGQLVWEIV KRNNCFLVKQ FGRGNAKVQF SKESNNLCNL NSYKHSGLAN KKTVTIQPAD KDQGVVLGTT
101: KTKKQNKPKL SVNKSVLKKE FPRMAKAVAN QVVDNYYRPD LKKAALARLS VISKGLRVAK SGPKRRNRQA
101: KTKKQNKPKL SVNKSVLKKE FPRMAKAVAN QVVDNYYRPD LKKAALARLS VISKGLRVAK SGPKRRNRQA
001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
Arabidopsis Description
RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.