Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G549700.1 | Wheat | cytosol | 51.72 | 86.54 |
| TraesCS3B01G505000.1 | Wheat | golgi | 53.45 | 82.3 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 50.57 | 82.24 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 50.57 | 77.88 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 58.05 | 68.71 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 57.47 | 68.03 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 44.83 | 58.65 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 57.47 | 57.47 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 47.13 | 57.34 |
| KXG22440 | Sorghum | cytosol | 47.13 | 56.16 |
| Zm00001d009417_P006 | Maize | cytosol | 47.13 | 55.78 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 54.6 | 54.29 |
| KRH45415 | Soybean | mitochondrion | 19.54 | 48.57 |
| Solyc03g121330.2.1 | Tomato | nucleus | 39.66 | 48.25 |
| PGSC0003DMT400016607 | Potato | cytosol | 39.66 | 48.25 |
| PGSC0003DMT400012339 | Potato | cytosol | 39.66 | 48.25 |
| PGSC0003DMT400006681 | Potato | extracellular | 39.66 | 48.25 |
| KRH44206 | Soybean | nucleus | 41.38 | 48.0 |
| KRH47170 | Soybean | endoplasmic reticulum | 40.8 | 47.33 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 40.23 | 46.98 |
| Bra024145.1-P | Field mustard | cytosol | 38.51 | 46.85 |
| Bra010329.1-P | Field mustard | cytosol | 38.51 | 46.85 |
| Bra011106.1-P | Field mustard | cytosol | 38.51 | 46.85 |
| CDY62032 | Canola | cytosol | 38.51 | 46.85 |
| CDY14213 | Canola | cytosol | 38.51 | 46.85 |
| CDY30215 | Canola | cytosol | 38.51 | 46.85 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 40.23 | 46.67 |
| KRH23342 | Soybean | endoplasmic reticulum | 40.23 | 46.67 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 39.66 | 46.62 |
| AT4G29410.1 | Thale cress | cytosol | 37.93 | 46.15 |
| AT2G19730.2 | Thale cress | cytosol | 37.93 | 46.15 |
| CDY35881 | Canola | cytosol | 37.93 | 46.15 |
| Bra039014.1-P | Field mustard | cytosol | 37.93 | 46.15 |
| CDX91669 | Canola | mitochondrion | 17.24 | 46.15 |
| Os02t0821200-01 | Rice | plastid | 24.14 | 45.65 |
| CDX82715 | Canola | cytosol | 37.36 | 45.45 |
| Bra036710.1-P | Field mustard | cytosol | 37.36 | 45.45 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 37.36 | 45.14 |
| CDX81940 | Canola | cytosol | 36.78 | 44.76 |
| Bra031093.1-P | Field mustard | cytosol | 36.78 | 44.76 |
| CDY21652 | Canola | cytosol | 36.21 | 44.06 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 46.55 | 42.86 |
| CDY06809 | Canola | extracellular | 39.66 | 40.59 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 42.53 | 40.22 |
| CDY43499 | Canola | mitochondrion | 39.66 | 39.88 |
| CDY03348 | Canola | plastid | 37.93 | 37.71 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 40.8 | 35.86 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 22.41 | 32.77 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 43.68 | 32.76 |
| CDY48720 | Canola | cytosol | 37.36 | 32.02 |
| Bra001548.1-P | Field mustard | nucleus | 18.97 | 27.73 |
| CDY47764 | Canola | cytosol | 29.31 | 26.02 |
| Solyc12g044720.1.1 | Tomato | nucleus | 8.05 | 25.93 |
| CDY41134 | Canola | cytosol | 6.32 | 18.33 |
| Bra033205.1-P | Field mustard | cytosol | 6.32 | 18.33 |
Protein Annotations
| MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:L28e/Mak16 | PFAM:PF01778 |
| PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 | InterPro:Ribosomal_L28e | EnsemblPlantsGene:TraesCS6D01G263800 | EnsemblPlants:TraesCS6D01G263800.1 | SEG:seg |
Description
No Description!
Coordinates
chr6D:-:372613043..372614765
Molecular Weight (calculated)
19868.0 Da
IEP (calculated)
10.177
GRAVY (calculated)
-0.502
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MHPTADPYPD QLRHRFRTQA KGMTTVPGSP VWELVKKNNY FLIKQFGNSN TKVQFSKEPN NLYNIQSYKF SGLANSKTME VQPSAGEDKA VVLSTTKTKK
101: QNTPAKLQHK TLMRKEFRKM AICQELGINS RVLYLNCPYA WLLSYNCKSR LVSASSVSSE LWHGMLDFLV DLCP
101: QNTPAKLQHK TLMRKEFRKM AICQELGINS RVLYLNCPYA WLLSYNCKSR LVSASSVSSE LWHGMLDFLV DLCP
001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
Arabidopsis Description
RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.