Factsheet for Bra011106.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010329.1-P	Field mustard	cytosol	96.5	96.5
Bra024145.1-P	Field mustard	cytosol	95.8	95.8
AT4G29410.1	Thale cress	cytosol	91.61	91.61
Bra039014.1-P	Field mustard	cytosol	90.91	90.91
Bra036710.1-P	Field mustard	cytosol	90.21	90.21
Bra031093.1-P	Field mustard	cytosol	89.51	89.51
CDY43499	Canola	mitochondrion	99.3	82.08
Bra033205.1-P	Field mustard	cytosol	32.87	78.33
Solyc12g044720.1.1	Tomato	nucleus	29.37	77.78
PGSC0003DMT400016607	Potato	cytosol	74.83	74.83
PGSC0003DMT400012339	Potato	cytosol	74.83	74.83
PGSC0003DMT400006681	Potato	extracellular	74.83	74.83
Solyc03g121330.2.1	Tomato	nucleus	74.13	74.13
VIT_04s0008g00790.t01	Wine grape	cytosol	73.43	72.92
KRH47170	Soybean	endoplasmic reticulum	74.83	71.33
VIT_09s0002g02560.t01	Wine grape	cytosol	74.13	71.14
KRH09991	Soybean	cytosol, endoplasmic reticulum	74.13	70.67
KRH44206	Soybean	nucleus	74.13	70.67
KRH23342	Soybean	endoplasmic reticulum	72.73	69.33
Os01t0706500-00	Rice	plastid	69.23	68.28
EES01347	Sorghum	cytosol	69.23	68.28
KXG22440	Sorghum	cytosol	69.23	67.81
Zm00001d009417_P006	Maize	cytosol	68.53	66.67
TraesCS3D01G253300.1	Wheat	cytosol	66.43	66.43
HORVU3Hr1G066430.1	Barley	cytosol	66.43	66.43
TraesCS3B01G284300.1	Wheat	cytosol	66.43	66.43
TraesCS3A01G252700.1	Wheat	cytosol, golgi	66.43	66.43
GSMUA_Achr1P05120_001	Banana	cytosol	67.83	65.54
Os02t0821200-01	Rice	plastid	40.56	63.04
HORVU1Hr1G079370.1	Barley	cytosol, peroxisome, plastid	64.34	62.59
TraesCS1D01G368700.1	Wheat	nucleus	64.34	62.59
TraesCS1B01G380800.1	Wheat	golgi	63.64	61.9
Solyc06g062500.2.1	Tomato	endoplasmic reticulum, plastid	51.05	61.34
TraesCS2D01G587700.1	Wheat	cytosol, plastid	45.45	60.75
KRH45415	Soybean	mitochondrion	29.37	60.0
TraesCS7B01G324000.1	Wheat	plastid	43.36	59.62
Os05t0541900-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	55.24	59.4
TraesCS5D01G549700.1	Wheat	cytosol	42.66	58.65
TraesCS3A01G379600.1	Wheat	cytosol	44.06	58.33
TraesCS1A01G215000.1	Wheat	cytosol	42.66	56.48
TraesCS3B01G505000.1	Wheat	golgi	44.06	55.75
TraesCS7B01G281500.1	Wheat	cytosol	43.36	54.87
GSMUA_Achr5P09610_001	Banana	plasma membrane	69.93	54.35
Zm00001d038865_P003	Maize	cytosol, mitochondrion, nucleus, plastid	68.53	51.85
GSMUA_Achr6P33480_001	Banana	nucleus	67.13	48.48
TraesCS1A01G363700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	64.34	46.7
GSMUA_Achr1P28120_001	Banana	mitochondrion	71.33	43.97
Bra001548.1-P	Field mustard	nucleus	35.66	42.86
TraesCS6D01G263800.1	Wheat	cytosol	46.85	38.51
TraesCS3D01G497400.1	Wheat	cytosol	45.45	37.36
TraesCS5A01G102300.1	Wheat	cytosol	44.76	36.57
TraesCS6A01G220700.1	Wheat	cytosol	25.87	17.05

Protein Annotations

MapMan:17.1.2.1.29	Gene3D:3.30.390.110	EnsemblPlantsGene:Bra011106	EnsemblPlants:Bra011106.1	EnsemblPlants:Bra011106.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:L28e/Mak16	UniProt:M4D3Q2	PFAM:PF01778	PANTHER:PTHR10544	PANTHER:PTHR10544:SF5
InterPro:Ribosomal_L28e	UniParc:UPI0002545713	:	:	:	:

Description

AT4G29410 (E=3e-070) | 60S ribosomal protein L28 (RPL28C)

Coordinates

chrA01:+:3847011..3848546

Molecular Weight (calculated)

15907.5 Da

IEP (calculated)

11.486

GRAVY (calculated)

-0.674

Length

143 amino acids

Sequence
(BLAST)

001: MATVPGQLVR EIVKRNNCFL VKQFGRGNAK VQFSKESNNL CNLNSYKHSG LANKKTVTIQ PADKDQGVVL GTTKTKKQNK PKLSVNKSVL KKEFPRMAKA
101: VANQVVDNYY RPDLKKAALA RLSVISKGLR VAKSGPKRRN RQA

Best Arabidopsis Sequence Match ( AT4G29410.2 )
(BLAST)

001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA

Arabidopsis Description

RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.