Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039014.1-P | Field mustard | cytosol | 99.3 | 99.3 |
| Bra031093.1-P | Field mustard | cytosol | 97.2 | 97.2 |
| AT2G19730.2 | Thale cress | cytosol | 90.21 | 90.21 |
| Bra010329.1-P | Field mustard | cytosol | 90.21 | 90.21 |
| Bra011106.1-P | Field mustard | cytosol | 90.21 | 90.21 |
| Bra024145.1-P | Field mustard | cytosol | 89.51 | 89.51 |
| Solyc12g044720.1.1 | Tomato | nucleus | 27.97 | 74.07 |
| PGSC0003DMT400016607 | Potato | cytosol | 73.43 | 73.43 |
| PGSC0003DMT400006681 | Potato | extracellular | 73.43 | 73.43 |
| Solyc03g121330.2.1 | Tomato | nucleus | 72.73 | 72.73 |
| PGSC0003DMT400012339 | Potato | cytosol | 72.73 | 72.73 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 72.73 | 72.22 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 73.43 | 70.47 |
| CDY48720 | Canola | cytosol | 100.0 | 70.44 |
| Bra033205.1-P | Field mustard | cytosol | 29.37 | 70.0 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 73.43 | 70.0 |
| KRH23342 | Soybean | endoplasmic reticulum | 72.03 | 68.67 |
| KRH47170 | Soybean | endoplasmic reticulum | 72.03 | 68.67 |
| KRH44206 | Soybean | nucleus | 71.33 | 68.0 |
| Os01t0706500-00 | Rice | plastid | 68.53 | 67.59 |
| EES01347 | Sorghum | cytosol | 68.53 | 67.59 |
| KXG22440 | Sorghum | cytosol | 68.53 | 67.12 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 68.53 | 66.22 |
| Zm00001d009417_P006 | Maize | cytosol | 67.83 | 65.99 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 65.73 | 65.73 |
| TraesCS3B01G284300.1 | Wheat | cytosol | 65.73 | 65.73 |
| HORVU3Hr1G066430.1 | Barley | cytosol | 65.73 | 65.73 |
| TraesCS3A01G252700.1 | Wheat | cytosol, golgi | 65.73 | 65.73 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 62.94 | 61.22 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 62.94 | 61.22 |
| TraesCS1B01G380800.1 | Wheat | golgi | 62.24 | 60.54 |
| Os02t0821200-01 | Rice | plastid | 38.46 | 59.78 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 44.06 | 58.88 |
| KRH45415 | Soybean | mitochondrion | 28.67 | 58.57 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 48.25 | 57.98 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 53.85 | 57.89 |
| TraesCS7B01G324000.1 | Wheat | plastid | 41.26 | 56.73 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 41.26 | 56.73 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 42.66 | 56.48 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 70.63 | 54.89 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 41.26 | 54.63 |
| TraesCS3B01G505000.1 | Wheat | golgi | 42.66 | 53.98 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 41.96 | 53.1 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 67.83 | 51.32 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 67.83 | 48.99 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 62.94 | 45.69 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 71.33 | 43.97 |
| Bra001548.1-P | Field mustard | nucleus | 32.87 | 39.5 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 45.45 | 37.36 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 44.06 | 36.21 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 44.06 | 36.0 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 25.87 | 17.05 |
Protein Annotations
| MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | EnsemblPlantsGene:Bra036710 | EnsemblPlants:Bra036710.1 | EnsemblPlants:Bra036710.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:L28e/Mak16 | UniProt:M4F6K0 | PFAM:PF01778 | PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 |
| InterPro:Ribosomal_L28e | UniParc:UPI0002542035 | : | : | : | : |
Description
AT2G19730 (E=4e-069) | 60S ribosomal protein L28 (RPL28A)
Coordinates
chrA09:+:5497280..5498304
Molecular Weight (calculated)
16033.7 Da
IEP (calculated)
11.237
GRAVY (calculated)
-0.600
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVPGQLIW EIVKTNNCFL VKQFGRGNAK VQFSKEKNNL CNLNSYKHSG LANKKTVTIQ PADKEQGVVL ATTKTKKQNK PKVSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKFALA RLSVISKSIR VAKSGAKQRN RQA
101: VANQVVDNYY RPDLKKFALA RLSVISKSIR VAKSGAKQRN RQA
001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
Arabidopsis Description
RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.