Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- peroxisome 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G368700.1 | Wheat | nucleus | 74.62 | 100.0 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 74.11 | 99.32 |
| TraesCS1B01G380800.1 | Wheat | golgi | 74.11 | 99.32 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 50.25 | 91.67 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 48.22 | 87.96 |
| Os02t0821200-01 | Rice | plastid | 38.58 | 82.61 |
| TraesCS3A01G252700.1 | Wheat | cytosol, golgi | 59.9 | 82.52 |
| KXG22440 | Sorghum | cytosol | 59.9 | 80.82 |
| Zm00001d009417_P006 | Maize | cytosol | 59.39 | 79.59 |
| Solyc12g044720.1.1 | Tomato | nucleus | 19.8 | 72.22 |
| PGSC0003DMT400006681 | Potato | extracellular | 50.25 | 69.23 |
| Solyc03g121330.2.1 | Tomato | nucleus | 50.25 | 69.23 |
| PGSC0003DMT400016607 | Potato | cytosol | 49.75 | 68.53 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 45.69 | 67.67 |
| PGSC0003DMT400012339 | Potato | cytosol | 48.73 | 67.13 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 50.76 | 67.11 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 50.25 | 66.89 |
| KRH47170 | Soybean | endoplasmic reticulum | 49.75 | 65.33 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 49.75 | 65.33 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 47.72 | 65.28 |
| AT2G19730.2 | Thale cress | cytosol | 47.21 | 65.03 |
| KRH44206 | Soybean | nucleus | 49.24 | 64.67 |
| KRH23342 | Soybean | endoplasmic reticulum | 49.24 | 64.67 |
| Bra024145.1-P | Field mustard | cytosol | 46.7 | 64.34 |
| Bra010329.1-P | Field mustard | cytosol | 46.7 | 64.34 |
| Bra011106.1-P | Field mustard | cytosol | 46.7 | 64.34 |
| CDY14213 | Canola | cytosol | 46.7 | 64.34 |
| CDY62032 | Canola | cytosol | 46.19 | 63.64 |
| Bra039014.1-P | Field mustard | cytosol | 46.19 | 63.64 |
| CDY35881 | Canola | cytosol | 46.19 | 63.64 |
| CDY30215 | Canola | cytosol | 46.19 | 63.64 |
| AT4G29410.1 | Thale cress | cytosol | 46.19 | 63.64 |
| Bra031093.1-P | Field mustard | cytosol | 45.69 | 62.94 |
| Bra036710.1-P | Field mustard | cytosol | 45.69 | 62.94 |
| CDX81940 | Canola | cytosol | 45.69 | 62.94 |
| CDX82715 | Canola | cytosol | 45.69 | 62.94 |
| CDY21652 | Canola | cytosol | 45.18 | 62.24 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 57.87 | 60.32 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 51.78 | 58.29 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 53.81 | 57.61 |
| CDY06809 | Canola | extracellular | 47.72 | 55.29 |
| CDY43499 | Canola | mitochondrion | 48.22 | 54.91 |
| CDY03348 | Canola | plastid | 47.72 | 53.71 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 31.47 | 52.1 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 51.78 | 51.52 |
| KRH45415 | Soybean | mitochondrion | 17.77 | 50.0 |
| CDY41134 | Canola | cytosol | 15.23 | 50.0 |
| Bra033205.1-P | Field mustard | cytosol | 15.23 | 50.0 |
| CDX91669 | Canola | mitochondrion | 16.24 | 49.23 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 55.84 | 47.41 |
| CDY48720 | Canola | cytosol | 46.7 | 45.32 |
| CDY47764 | Canola | cytosol | 36.04 | 36.22 |
| Bra001548.1-P | Field mustard | nucleus | 20.81 | 34.45 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 31.47 | 28.57 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G363700.1 | EnsemblPlantsGene:TraesCS1A01G363700 | Gene3D:3.30.390.110 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:L28e/Mak16 |
| InterPro:Ribosomal_L28e | PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 | PFAM:PF01778 | MapMan:17.1.2.1.29 | : |
Description
No Description!
Coordinates
chr1A:-:544046494..544052618
Molecular Weight (calculated)
22000.0 Da
IEP (calculated)
11.148
GRAVY (calculated)
-0.542
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVMGRLKIF VVKEPVVAAS CLIAGFATTT PNPPEQTKAA PRRPHLRPRE MTTVPGSLVW ELVKKNNCFL IKQFGNSNAK VQFSKEPNNL YNVHSYKFSG
101: LANSKTVAVQ PSAGEDKAVV LSTTKTKKQN TPAKLQHKTL MRKEFRKMAK SVKNQVCDNY YRPDLTKPAL ARLSAVYRSL QVSKSGIKKK NRQPTKL
101: LANSKTVAVQ PSAGEDKAVV LSTTKTKKQN TPAKLQHKTL MRKEFRKMAK SVKNQVCDNY YRPDLTKPAL ARLSAVYRSL QVSKSGIKKK NRQPTKL
001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
Arabidopsis Description
RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.