Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011106.1-P | Field mustard | cytosol | 82.08 | 99.3 |
| CDY14213 | Canola | cytosol | 80.35 | 97.2 |
| CDY30215 | Canola | cytosol | 80.35 | 97.2 |
| CDY62032 | Canola | cytosol | 79.77 | 96.5 |
| AT4G29410.1 | Thale cress | cytosol | 76.3 | 92.31 |
| CDY35881 | Canola | cytosol | 75.72 | 91.61 |
| CDX82715 | Canola | cytosol | 75.14 | 90.91 |
| CDY21652 | Canola | cytosol | 75.14 | 90.91 |
| CDX81940 | Canola | cytosol | 74.57 | 90.21 |
| CDY06809 | Canola | extracellular | 85.55 | 87.06 |
| CDY41134 | Canola | cytosol | 27.17 | 78.33 |
| Solyc12g044720.1.1 | Tomato | nucleus | 24.28 | 77.78 |
| CDY03348 | Canola | plastid | 78.03 | 77.14 |
| PGSC0003DMT400012339 | Potato | cytosol | 62.43 | 75.52 |
| PGSC0003DMT400006681 | Potato | extracellular | 62.43 | 75.52 |
| PGSC0003DMT400016607 | Potato | cytosol | 62.43 | 75.52 |
| Solyc03g121330.2.1 | Tomato | nucleus | 61.85 | 74.83 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 61.27 | 73.61 |
| KRH47170 | Soybean | endoplasmic reticulum | 62.43 | 72.0 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 61.85 | 71.81 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 61.85 | 71.33 |
| KRH44206 | Soybean | nucleus | 61.85 | 71.33 |
| KRH23342 | Soybean | endoplasmic reticulum | 60.69 | 70.0 |
| Os01t0706500-00 | Rice | plastid | 57.8 | 68.97 |
| EES01347 | Sorghum | cytosol | 57.8 | 68.97 |
| KXG22440 | Sorghum | cytosol | 57.8 | 68.49 |
| Zm00001d009417_P006 | Maize | cytosol | 57.23 | 67.35 |
| TraesCS3B01G284300.1 | Wheat | cytosol | 55.49 | 67.13 |
| HORVU3Hr1G066430.1 | Barley | cytosol | 55.49 | 67.13 |
| TraesCS3A01G252700.1 | Wheat | cytosol, golgi | 55.49 | 67.13 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 55.49 | 67.13 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 56.65 | 66.22 |
| CDY48720 | Canola | cytosol | 76.88 | 65.52 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 53.76 | 63.27 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 53.76 | 63.27 |
| Os02t0821200-01 | Rice | plastid | 33.53 | 63.04 |
| TraesCS1B01G380800.1 | Wheat | golgi | 53.18 | 62.59 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 38.15 | 61.68 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 42.2 | 61.34 |
| TraesCS7B01G324000.1 | Wheat | plastid | 36.42 | 60.58 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 46.24 | 60.15 |
| KRH45415 | Soybean | mitochondrion | 24.28 | 60.0 |
| CDX91669 | Canola | mitochondrion | 22.54 | 60.0 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 35.84 | 59.62 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 36.99 | 59.26 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 35.84 | 57.41 |
| TraesCS3B01G505000.1 | Wheat | golgi | 36.99 | 56.64 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 36.42 | 55.75 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 58.96 | 55.43 |
| CDY47764 | Canola | cytosol | 62.43 | 55.1 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 57.23 | 52.38 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 57.8 | 50.51 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 54.91 | 48.22 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 60.12 | 44.83 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 39.88 | 39.66 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 39.88 | 39.66 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 39.31 | 38.86 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 21.39 | 17.05 |
Protein Annotations
| MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | GO:A0A078I1M1 | UniProt:A0A078I1M1 | EnsemblPlants:CDY43499 | ProteinID:CDY43499 |
| ProteinID:CDY43499.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00076782001 | InterPro:L28e/Mak16 | PFAM:PF01778 |
| PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 | InterPro:Ribosomal_L28e | UniParc:UPI0004EE904D | SEG:seg | : |
Description
BnaA01g07450DBnaA01g07450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1M1]
Coordinates
chrLK032560:-:25637..27808
Molecular Weight (calculated)
19262.6 Da
IEP (calculated)
11.076
GRAVY (calculated)
-0.529
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVMVLVTKN PSPSLFYPPL SSSSTCEEIE MATVPGQLVW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL CNLNSYKHSG LANKKTVTIQ PADKDQGVVL
101: GTTKTKKQNK PKLSVNKSVL KKEFPRMAKA VANQVVDNYY RPDLKKAALA RLSVISKGLR VAKSGPKRRN RQA
101: GTTKTKKQNK PKLSVNKSVL KKEFPRMAKA VANQVVDNYY RPDLKKAALA RLSVISKGLR VAKSGPKRRN RQA
001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
Arabidopsis Description
RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.