Factsheet for TraesCS3A01G252700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G066430.1	Barley	cytosol	98.6	98.6
TraesCS3D01G253300.1	Wheat	cytosol	98.6	98.6
TraesCS3B01G284300.1	Wheat	cytosol	98.6	98.6
EES01347	Sorghum	cytosol	88.11	86.9
Os01t0706500-00	Rice	plastid	87.41	86.21
Solyc12g044720.1.1	Tomato	nucleus	28.67	75.93
TraesCS3A01G379600.1	Wheat	cytosol	53.85	71.3
TraesCS1A01G215000.1	Wheat	cytosol	53.15	70.37
PGSC0003DMT400012339	Potato	cytosol	67.13	67.13
KRH09991	Soybean	cytosol, endoplasmic reticulum	69.93	66.67
CDY14213	Canola	cytosol	66.43	66.43
PGSC0003DMT400006681	Potato	extracellular	66.43	66.43
PGSC0003DMT400016607	Potato	cytosol	66.43	66.43
Solyc03g121330.2.1	Tomato	nucleus	66.43	66.43
Bra011106.1-P	Field mustard	cytosol	66.43	66.43
Bra010329.1-P	Field mustard	cytosol	66.43	66.43
GSMUA_Achr1P05120_001	Banana	cytosol	68.53	66.22
KRH47170	Soybean	endoplasmic reticulum	69.23	66.0
KRH44206	Soybean	nucleus	69.23	66.0
VIT_04s0008g00790.t01	Wine grape	cytosol	66.43	65.97
CDX82715	Canola	cytosol	65.73	65.73
CDY21652	Canola	cytosol	65.73	65.73
CDY30215	Canola	cytosol	65.73	65.73
CDX81940	Canola	cytosol	65.73	65.73
Bra036710.1-P	Field mustard	cytosol	65.73	65.73
Bra031093.1-P	Field mustard	cytosol	65.73	65.73
Bra024145.1-P	Field mustard	cytosol	65.73	65.73
CDY62032	Canola	cytosol	65.73	65.73
AT2G19730.2	Thale cress	cytosol	65.73	65.73
VIT_09s0002g02560.t01	Wine grape	cytosol	67.83	65.1
Bra039014.1-P	Field mustard	cytosol	65.03	65.03
CDY35881	Canola	cytosol	65.03	65.03
KRH23342	Soybean	endoplasmic reticulum	67.83	64.67
AT4G29410.1	Thale cress	cytosol	63.64	63.64
TraesCS1A01G363700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	82.52	59.9
CDY06809	Canola	extracellular	67.13	56.47
CDY43499	Canola	mitochondrion	67.13	55.49
GSMUA_Achr5P09610_001	Banana	plasma membrane	71.33	55.43
Solyc06g062500.2.1	Tomato	endoplasmic reticulum, plastid	44.76	53.78
CDY03348	Canola	plastid	65.73	53.71
KRH45415	Soybean	mitochondrion	25.87	52.86
Bra033205.1-P	Field mustard	cytosol	21.68	51.67
CDY41134	Canola	cytosol	21.68	51.67
CDX91669	Canola	mitochondrion	22.38	49.23
GSMUA_Achr6P33480_001	Banana	nucleus	67.83	48.99
CDY48720	Canola	cytosol	65.73	46.31
TraesCS5A01G102300.1	Wheat	cytosol	54.55	44.57
GSMUA_Achr1P28120_001	Banana	mitochondrion	71.33	43.97
CDY47764	Canola	cytosol	55.24	40.31
Bra001548.1-P	Field mustard	nucleus	25.17	30.25
TraesCS6A01G220700.1	Wheat	cytosol	34.27	22.58

Protein Annotations

EnsemblPlants:TraesCS3A01G252700.1	EnsemblPlantsGene:TraesCS3A01G252700	Gene3D:3.30.390.110	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:L28e/Mak16
InterPro:Ribosomal_L28e	PANTHER:PTHR10544	PANTHER:PTHR10544:SF5	PFAM:PF01778	MapMan:17.1.2.1.29	:

Description

No Description!

Coordinates

chr3A:-:473216406..473217519

Molecular Weight (calculated)

16259.8 Da

IEP (calculated)

10.998

GRAVY (calculated)

-0.690

Length

143 amino acids

Sequence
(BLAST)

001: MATVSDSLVW ELVRKNNCFL IKQFGNSNAK VQFSKEPNNL YNVHSYKYSG LANKKTVTVQ PAADKEMTVV LSTTKSKKQN KPAAFTHKTV MRKEFRKMAK
101: AIKNQVSDNY YRPDLTKPAL ARLSAVYRSL QVAKSGVKKK NRQ

Best Arabidopsis Sequence Match ( AT2G19730.2 )
(BLAST)

001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA

Arabidopsis Description

RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.