Factsheet for GSMUA_Achr6P33480_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P05120_001	Banana	cytosol	73.23	97.97
VIT_09s0002g02560.t01	Wine grape	cytosol	57.58	76.51
Solyc03g121330.2.1	Tomato	nucleus	55.05	76.22
PGSC0003DMT400006681	Potato	extracellular	54.04	74.83
GSMUA_Achr5P09610_001	Banana	plasma membrane	69.19	74.46
VIT_04s0008g00790.t01	Wine grape	cytosol	54.04	74.31
PGSC0003DMT400016607	Potato	cytosol	53.54	74.13
PGSC0003DMT400012339	Potato	cytosol	53.54	74.13
Solyc12g044720.1.1	Tomato	nucleus	20.2	74.07
Os01t0706500-00	Rice	plastid	54.04	73.79
EES01347	Sorghum	cytosol	53.54	73.1
KXG22440	Sorghum	cytosol	53.03	71.92
Zm00001d009417_P006	Maize	cytosol	53.03	71.43
KRH47170	Soybean	endoplasmic reticulum	53.54	70.67
KRH09991	Soybean	cytosol, endoplasmic reticulum	53.54	70.67
KRH23342	Soybean	endoplasmic reticulum	53.03	70.0
KRH44206	Soybean	nucleus	52.53	69.33
AT2G19730.2	Thale cress	cytosol	50.0	69.23
AT4G29410.1	Thale cress	cytosol	50.0	69.23
Bra031093.1-P	Field mustard	cytosol	50.0	69.23
CDY21652	Canola	cytosol	50.0	69.23
CDX81940	Canola	cytosol	50.0	69.23
TraesCS3B01G284300.1	Wheat	cytosol	49.49	68.53
TraesCS3D01G253300.1	Wheat	cytosol	49.49	68.53
CDY35881	Canola	cytosol	49.49	68.53
Bra039014.1-P	Field mustard	cytosol	49.49	68.53
HORVU3Hr1G066430.1	Barley	cytosol	49.49	68.53
Os02t0821200-01	Rice	plastid	31.82	68.48
TraesCS1B01G380800.1	Wheat	golgi	50.51	68.03
TraesCS1D01G368700.1	Wheat	nucleus	50.51	68.03
HORVU1Hr1G079370.1	Barley	cytosol, peroxisome, plastid	50.51	68.03
TraesCS3A01G252700.1	Wheat	cytosol, golgi	48.99	67.83
CDX82715	Canola	cytosol	48.99	67.83
Bra036710.1-P	Field mustard	cytosol	48.99	67.83
CDY30215	Canola	cytosol	48.48	67.13
Bra011106.1-P	Field mustard	cytosol	48.48	67.13
CDY14213	Canola	cytosol	47.98	66.43
Bra024145.1-P	Field mustard	cytosol	47.98	66.43
Bra010329.1-P	Field mustard	cytosol	47.98	66.43
CDY62032	Canola	cytosol	47.47	65.73
Os05t0541900-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	43.94	65.41
TraesCS2D01G587700.1	Wheat	cytosol, plastid	33.33	61.68
TraesCS3A01G379600.1	Wheat	cytosol	33.33	61.11
TraesCS7B01G324000.1	Wheat	plastid	31.82	60.58
TraesCS5D01G549700.1	Wheat	cytosol	31.82	60.58
Solyc06g062500.2.1	Tomato	endoplasmic reticulum, plastid	35.86	59.66
TraesCS1A01G215000.1	Wheat	cytosol	32.32	59.26
KRH45415	Soybean	mitochondrion	20.71	58.57
TraesCS3B01G505000.1	Wheat	golgi	33.33	58.41
CDY43499	Canola	mitochondrion	50.51	57.8
GSMUA_Achr1P28120_001	Banana	mitochondrion	67.68	57.76
CDY06809	Canola	extracellular	48.99	57.06
TraesCS7B01G281500.1	Wheat	cytosol	32.32	56.64
CDY03348	Canola	plastid	49.49	56.0
Zm00001d038865_P003	Maize	cytosol, mitochondrion, nucleus, plastid	52.53	55.03
TraesCS1A01G363700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	51.52	51.78
CDY48720	Canola	cytosol	51.52	50.25
CDY41134	Canola	cytosol	15.15	50.0
Bra033205.1-P	Field mustard	cytosol	15.15	50.0
CDX91669	Canola	mitochondrion	14.65	44.62
TraesCS6D01G263800.1	Wheat	cytosol	35.86	40.8
TraesCS3D01G497400.1	Wheat	cytosol	35.35	40.23
TraesCS5A01G102300.1	Wheat	cytosol	35.35	40.0
CDY47764	Canola	cytosol	36.87	37.24
Bra001548.1-P	Field mustard	nucleus	22.22	36.97
TraesCS6A01G220700.1	Wheat	cytosol	19.7	17.97

Protein Annotations

MapMan:17.1.2.1.29	Gene3D:3.30.390.110	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G33480_001	EnsemblPlants:GSMUA_Achr6P33480_001
EnsemblPlants:GSMUA_Achr6T33480_001	InterPro:L28e/Mak16	UniProt:M0TCE1	PFAM:PF01778	PANTHER:PTHR10544	PANTHER:PTHR10544:SF5
InterPro:Ribosomal_L28e	UniParc:UPI000296F3B7	:	:	:	:

Description

60S ribosomal protein L28-2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G33480_001]

Coordinates

chr6:-:32500472..32506282

Molecular Weight (calculated)

22568.5 Da

IEP (calculated)

11.038

GRAVY (calculated)

-0.591

Length

198 amino acids

Sequence
(BLAST)

001: MFLHDFILSE YVNYKKKCST RVHEQGRRSR RIATTEWNSF ISFCPCNRSL MATVPGPLIW EIVKKNNAFL VKQFGNDTAM VQFSKEPNNL YNVNSYKHSG
101: LANKKTVTIQ AGGKDLSIAI ATTKTKKQNK PGSLYHRSVM KKEFCKMAKV VMNQVTDNHY RPDLTNSALA RLSAVHRSLK VSKSGAKKRN RQALKVRN

Best Arabidopsis Sequence Match ( AT4G29410.2 )
(BLAST)

001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA

Arabidopsis Description

RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.