Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G549700.1 | Wheat | cytosol | 47.69 | 29.81 |
| TraesCS7B01G324000.1 | Wheat | plastid | 47.69 | 29.81 |
| CDY62032 | Canola | cytosol | 64.62 | 29.37 |
| CDY14213 | Canola | cytosol | 64.62 | 29.37 |
| CDY30215 | Canola | cytosol | 64.62 | 29.37 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 46.15 | 28.04 |
| CDX81940 | Canola | cytosol | 61.54 | 27.97 |
| CDX82715 | Canola | cytosol | 61.54 | 27.97 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 46.15 | 27.78 |
| TraesCS3B01G505000.1 | Wheat | golgi | 47.69 | 27.43 |
| CDY35881 | Canola | cytosol | 60.0 | 27.27 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 44.62 | 26.85 |
| CDY21652 | Canola | cytosol | 58.46 | 26.57 |
| PGSC0003DMT400006681 | Potato | extracellular | 56.92 | 25.87 |
| KRH45415 | Soybean | mitochondrion | 27.69 | 25.71 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 44.62 | 25.66 |
| AT4G29410.1 | Thale cress | cytosol | 55.38 | 25.17 |
| PGSC0003DMT400016607 | Potato | cytosol | 55.38 | 25.17 |
| Solyc03g121330.2.1 | Tomato | nucleus | 55.38 | 25.17 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 52.31 | 23.61 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 53.85 | 23.49 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 47.69 | 23.31 |
| KXG22440 | Sorghum | cytosol | 52.31 | 23.29 |
| PGSC0003DMT400012339 | Potato | cytosol | 50.77 | 23.08 |
| CDY06809 | Canola | extracellular | 60.0 | 22.94 |
| CDY03348 | Canola | plastid | 61.54 | 22.86 |
| CDY43499 | Canola | mitochondrion | 60.0 | 22.54 |
| Zm00001d009417_P006 | Maize | cytosol | 50.77 | 22.45 |
| TraesCS3A01G252700.1 | Wheat | cytosol, golgi | 49.23 | 22.38 |
| EES01347 | Sorghum | cytosol | 49.23 | 22.07 |
| KRH23342 | Soybean | endoplasmic reticulum | 50.77 | 22.0 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 49.23 | 21.77 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 49.23 | 21.77 |
| HORVU3Hr1G066430.1 | Barley | cytosol | 47.69 | 21.68 |
| TraesCS3B01G284300.1 | Wheat | cytosol | 47.69 | 21.68 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 47.69 | 21.68 |
| Os01t0706500-00 | Rice | plastid | 47.69 | 21.38 |
| KRH47170 | Soybean | endoplasmic reticulum | 49.23 | 21.33 |
| KRH44206 | Soybean | nucleus | 49.23 | 21.33 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 49.23 | 21.33 |
| TraesCS1B01G380800.1 | Wheat | golgi | 47.69 | 21.09 |
| Os02t0821200-01 | Rice | plastid | 29.23 | 20.65 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 46.15 | 20.27 |
| CDY48720 | Canola | cytosol | 61.54 | 19.7 |
| CDY47764 | Canola | cytosol | 58.46 | 19.39 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 47.69 | 17.71 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 50.77 | 17.46 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 49.23 | 17.39 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 46.15 | 17.24 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 46.15 | 17.24 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 30.77 | 16.81 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 49.23 | 16.24 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 44.62 | 14.65 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 44.62 | 12.5 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 38.46 | 11.52 |
| CDY41134 | Canola | cytosol | 6.15 | 6.67 |
| Solyc12g044720.1.1 | Tomato | nucleus | 4.62 | 5.56 |
Protein Annotations
| MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | EnsemblPlants:CDX91669 | ProteinID:CDX91669 | ProteinID:CDX91669.1 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00153128001 | PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 | InterPro:Ribosomal_L28e | UniParc:UPI0004EE0081 |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g05880D
Coordinates
chrLK031869:+:18600..19467
Molecular Weight (calculated)
7416.0 Da
IEP (calculated)
10.796
GRAVY (calculated)
-0.674
Length
65 amino acids
Sequence
(BLAST)
(BLAST)
1: MTNFLGRKTT SNNLCKLNSY RHSGLAYQKT VTIQVADKEK GVVLGTTKKK KQNKFIGYKD FSWTV
001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
Arabidopsis Description
RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.