Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- peroxisome 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G368700.1 | Wheat | nucleus | 99.32 | 99.32 |
| TraesCS1B01G380800.1 | Wheat | golgi | 98.64 | 98.64 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 68.71 | 94.39 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 67.35 | 91.67 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 64.63 | 91.35 |
| TraesCS7B01G324000.1 | Wheat | plastid | 63.95 | 90.38 |
| TraesCS3B01G505000.1 | Wheat | golgi | 68.03 | 88.5 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 64.63 | 87.96 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 67.35 | 87.61 |
| HORVU3Hr1G066430.1 | Barley | cytosol | 81.63 | 83.92 |
| Os02t0821200-01 | Rice | plastid | 52.38 | 83.7 |
| KXG22440 | Sorghum | cytosol | 80.95 | 81.51 |
| Zm00001d009417_P006 | Maize | cytosol | 80.27 | 80.27 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 99.32 | 74.11 |
| Solyc12g044720.1.1 | Tomato | nucleus | 27.21 | 74.07 |
| Solyc03g121330.2.1 | Tomato | nucleus | 67.35 | 69.23 |
| PGSC0003DMT400016607 | Potato | cytosol | 67.35 | 69.23 |
| PGSC0003DMT400006681 | Potato | extracellular | 67.35 | 69.23 |
| PGSC0003DMT400012339 | Potato | cytosol | 65.99 | 67.83 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 68.71 | 67.79 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 61.22 | 67.67 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 67.35 | 66.89 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 67.35 | 66.0 |
| KRH47170 | Soybean | endoplasmic reticulum | 67.35 | 66.0 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 64.63 | 65.97 |
| KRH23342 | Soybean | endoplasmic reticulum | 66.67 | 65.33 |
| KRH44206 | Soybean | nucleus | 66.67 | 65.33 |
| AT2G19730.2 | Thale cress | cytosol | 63.27 | 65.03 |
| CDY14213 | Canola | cytosol | 62.59 | 64.34 |
| Bra024145.1-P | Field mustard | cytosol | 62.59 | 64.34 |
| Bra011106.1-P | Field mustard | cytosol | 62.59 | 64.34 |
| Bra010329.1-P | Field mustard | cytosol | 62.59 | 64.34 |
| AT4G29410.1 | Thale cress | cytosol | 61.9 | 63.64 |
| CDY62032 | Canola | cytosol | 61.9 | 63.64 |
| Bra039014.1-P | Field mustard | cytosol | 61.9 | 63.64 |
| CDY30215 | Canola | cytosol | 61.9 | 63.64 |
| CDY35881 | Canola | cytosol | 61.9 | 63.64 |
| CDX82715 | Canola | cytosol | 61.22 | 62.94 |
| Bra031093.1-P | Field mustard | cytosol | 61.22 | 62.94 |
| Bra036710.1-P | Field mustard | cytosol | 61.22 | 62.94 |
| CDX81940 | Canola | cytosol | 61.22 | 62.94 |
| CDY21652 | Canola | cytosol | 60.54 | 62.24 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 77.55 | 60.32 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 68.71 | 58.05 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 68.03 | 57.47 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 67.35 | 56.57 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 70.75 | 56.52 |
| CDY06809 | Canola | extracellular | 63.27 | 54.71 |
| CDY43499 | Canola | mitochondrion | 63.27 | 53.76 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 42.86 | 52.94 |
| CDY03348 | Canola | plastid | 61.22 | 51.43 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 68.03 | 50.51 |
| KRH45415 | Soybean | mitochondrion | 23.81 | 50.0 |
| CDY41134 | Canola | cytosol | 20.41 | 50.0 |
| Bra033205.1-P | Field mustard | cytosol | 20.41 | 50.0 |
| CDX91669 | Canola | mitochondrion | 21.77 | 49.23 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 70.07 | 44.4 |
| CDY48720 | Canola | cytosol | 61.22 | 44.34 |
| CDY47764 | Canola | cytosol | 48.3 | 36.22 |
| Bra001548.1-P | Field mustard | nucleus | 25.85 | 31.93 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 40.82 | 27.65 |
Protein Annotations
| MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | EMBL:AK358000 | UniProt:F2D293 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| EnsemblPlantsGene:HORVU1Hr1G079370 | EnsemblPlants:HORVU1Hr1G079370.1 | InterPro:L28e/Mak16 | PFAM:PF01778 | PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 |
| InterPro:Ribosomal_L28e | UniParc:UPI00020053C3 | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D293]
Coordinates
chrchr1H:-:522834724..522837858
Molecular Weight (calculated)
16563.2 Da
IEP (calculated)
11.020
GRAVY (calculated)
-0.682
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTVPGSLVW ELVKKNNCFL IKQFGNSNAK VQFSKEPNNL YNVHSYKFSG LANSKTVAVQ PSAGEDKAVV LSTTKTKKQN TPAKLQHKTL MRKEFRKMAK
101: SVKNQVCDNY YRPDLTKPAL ARLSAVYRSL QVSKSGVKKK NRQPTKL
101: SVKNQVCDNY YRPDLTKPAL ARLSAVYRSL QVSKSGVKKK NRQPTKL
001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
Arabidopsis Description
RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.