Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14213 | Canola | cytosol | 56.63 | 77.62 |
| CDY62032 | Canola | cytosol | 56.12 | 76.92 |
| CDY30215 | Canola | cytosol | 55.61 | 76.22 |
| CDX81940 | Canola | cytosol | 52.55 | 72.03 |
| CDY21652 | Canola | cytosol | 52.55 | 72.03 |
| AT4G29410.1 | Thale cress | cytosol | 52.04 | 71.33 |
| CDX82715 | Canola | cytosol | 51.53 | 70.63 |
| CDY35881 | Canola | cytosol | 51.02 | 69.93 |
| CDY06809 | Canola | extracellular | 55.1 | 63.53 |
| CDY41134 | Canola | cytosol | 19.39 | 63.33 |
| Solyc12g044720.1.1 | Tomato | nucleus | 17.35 | 62.96 |
| CDY43499 | Canola | mitochondrion | 55.1 | 62.43 |
| CDX91669 | Canola | mitochondrion | 19.39 | 58.46 |
| CDY03348 | Canola | plastid | 51.53 | 57.71 |
| PGSC0003DMT400012339 | Potato | cytosol | 41.84 | 57.34 |
| PGSC0003DMT400016607 | Potato | cytosol | 41.84 | 57.34 |
| PGSC0003DMT400006681 | Potato | extracellular | 41.33 | 56.64 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 40.82 | 55.56 |
| TraesCS3A01G252700.1 | Wheat | cytosol, golgi | 40.31 | 55.24 |
| Solyc03g121330.2.1 | Tomato | nucleus | 40.31 | 55.24 |
| Os01t0706500-00 | Rice | plastid | 40.82 | 55.17 |
| HORVU3Hr1G066430.1 | Barley | cytosol | 39.8 | 54.55 |
| TraesCS3B01G284300.1 | Wheat | cytosol | 39.8 | 54.55 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 39.8 | 54.55 |
| EES01347 | Sorghum | cytosol | 40.31 | 54.48 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 41.33 | 54.36 |
| Os02t0821200-01 | Rice | plastid | 25.51 | 54.35 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 41.33 | 54.0 |
| KXG22440 | Sorghum | cytosol | 39.8 | 53.42 |
| KRH23342 | Soybean | endoplasmic reticulum | 40.31 | 52.67 |
| KRH47170 | Soybean | endoplasmic reticulum | 39.8 | 52.0 |
| Zm00001d009417_P006 | Maize | cytosol | 38.78 | 51.7 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 38.78 | 51.35 |
| KRH44206 | Soybean | nucleus | 39.29 | 51.33 |
| CDY48720 | Canola | cytosol | 51.53 | 49.75 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 30.1 | 49.58 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 36.22 | 48.3 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 36.22 | 48.3 |
| TraesCS1B01G380800.1 | Wheat | golgi | 35.71 | 47.62 |
| KRH45415 | Soybean | mitochondrion | 16.33 | 45.71 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 29.08 | 42.86 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 39.8 | 42.39 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 22.45 | 42.31 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 22.45 | 41.12 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 39.29 | 40.74 |
| TraesCS3B01G505000.1 | Wheat | golgi | 23.47 | 40.71 |
| TraesCS7B01G324000.1 | Wheat | plastid | 21.43 | 40.38 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 21.94 | 39.81 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 21.94 | 39.81 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 21.94 | 38.05 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 37.24 | 36.87 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 36.22 | 36.04 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 40.31 | 34.05 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 26.02 | 29.31 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 23.98 | 26.86 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 23.47 | 26.44 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 16.84 | 15.21 |
Protein Annotations
| MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | GO:A0A078IEH0 | UniProt:A0A078IEH0 | EnsemblPlants:CDY47764 | ProteinID:CDY47764 |
| ProteinID:CDY47764.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00088059001 | InterPro:L28e/Mak16 | PFAM:PF01778 |
| PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 | InterPro:Ribosomal_L28e | UniParc:UPI0004EE4816 | : | : |
Description
BnaC07g41960DBnaC07g41960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IEH0]
Coordinates
chrLK032734:+:4775..6461
Molecular Weight (calculated)
22028.8 Da
IEP (calculated)
10.764
GRAVY (calculated)
-0.647
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MIHNNLVCNM IENTKLCVFE YFVRELDIPL GDHRNDNSSR TVGVGDSEEK QLFLGQTVRF GRGNAKVQFN KETNNLCNLN SYKHSGLANK KTVTIQVADK
101: EQGVVLGTTK SKKQNKPKLS VNKSVLKKEL VPQDGQSCCQ PAVMRKLTRK KRQLLCGVVD NYYRPDLKKA ALARLSVISK GLRVAKSGPK RRNRQA
101: EQGVVLGTTK SKKQNKPKLS VNKSVLKKEL VPQDGQSCCQ PAVMRKLTRK KRQLLCGVVD NYYRPDLKKA ALARLSVISK GLRVAKSGPK RRNRQA
001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
Arabidopsis Description
RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.