Factsheet for Solyc06g062500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 5
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044720.1.1	Tomato	nucleus	40.34	88.89
Os02t0821200-01	Rice	plastid	52.1	67.39
Bra033205.1-P	Field mustard	cytosol	30.25	60.0
CDY41134	Canola	cytosol	30.25	60.0
Solyc03g121330.2.1	Tomato	nucleus	70.59	58.74
KRH09991	Soybean	cytosol, endoplasmic reticulum	72.27	57.33
VIT_04s0008g00790.t01	Wine grape	cytosol	68.07	56.25
KRH47170	Soybean	endoplasmic reticulum	70.59	56.0
KRH23342	Soybean	endoplasmic reticulum	70.59	56.0
VIT_09s0002g02560.t01	Wine grape	cytosol	69.75	55.7
KRH44206	Soybean	nucleus	69.75	55.33
Bra011106.1-P	Field mustard	cytosol	61.34	51.05
EES01347	Sorghum	cytosol	60.5	49.66
AT4G29410.1	Thale cress	cytosol	59.66	49.65
CDY21652	Canola	cytosol	59.66	49.65
AT2G19730.2	Thale cress	cytosol	59.66	49.65
CDY30215	Canola	cytosol	58.82	48.95
CDY35881	Canola	cytosol	58.82	48.95
Bra010329.1-P	Field mustard	cytosol	58.82	48.95
Bra039014.1-P	Field mustard	cytosol	58.82	48.95
CDY14213	Canola	cytosol	58.82	48.95
GSMUA_Achr1P05120_001	Banana	cytosol	60.5	48.65
Os01t0706500-00	Rice	plastid	58.82	48.28
CDY62032	Canola	cytosol	57.98	48.25
CDX82715	Canola	cytosol	57.98	48.25
CDX81940	Canola	cytosol	57.98	48.25
Bra036710.1-P	Field mustard	cytosol	57.98	48.25
Bra024145.1-P	Field mustard	cytosol	57.98	48.25
Bra031093.1-P	Field mustard	cytosol	57.14	47.55
KXG22440	Sorghum	cytosol	57.98	47.26
Zm00001d009417_P006	Maize	cytosol	57.14	46.26
TraesCS3B01G284300.1	Wheat	cytosol	54.62	45.45
HORVU3Hr1G066430.1	Barley	cytosol	54.62	45.45
TraesCS3D01G253300.1	Wheat	cytosol	54.62	45.45
TraesCS3A01G252700.1	Wheat	cytosol, golgi	53.78	44.76
CDY06809	Canola	extracellular	61.34	42.94
HORVU1Hr1G079370.1	Barley	cytosol, peroxisome, plastid	52.94	42.86
CDY43499	Canola	mitochondrion	61.34	42.2
TraesCS1D01G368700.1	Wheat	nucleus	52.1	42.18
TraesCS1B01G380800.1	Wheat	golgi	52.1	42.18
GSMUA_Achr5P09610_001	Banana	plasma membrane	63.03	40.76
CDY03348	Canola	plastid	57.98	39.43
Os05t0541900-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	42.02	37.59
Zm00001d038865_P003	Maize	cytosol, mitochondrion, nucleus, plastid	57.98	36.51
GSMUA_Achr6P33480_001	Banana	nucleus	59.66	35.86
TraesCS5D01G549700.1	Wheat	cytosol	30.25	34.62
TraesCS2D01G587700.1	Wheat	cytosol, plastid	31.09	34.58
TraesCS1A01G215000.1	Wheat	cytosol	31.09	34.26
TraesCS3A01G379600.1	Wheat	cytosol	31.09	34.26
CDY48720	Canola	cytosol	57.98	33.99
TraesCS7B01G324000.1	Wheat	plastid	29.41	33.65
TraesCS3B01G505000.1	Wheat	golgi	31.09	32.74
TraesCS7B01G281500.1	Wheat	cytosol	31.09	32.74
GSMUA_Achr1P28120_001	Banana	mitochondrion	63.03	32.33
TraesCS1A01G363700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	52.1	31.47
CDX91669	Canola	mitochondrion	16.81	30.77
CDY47764	Canola	cytosol	49.58	30.1
KRH45415	Soybean	mitochondrion	15.97	27.14
TraesCS6D01G263800.1	Wheat	cytosol	32.77	22.41
TraesCS3D01G497400.1	Wheat	cytosol	31.09	21.26
TraesCS5A01G102300.1	Wheat	cytosol	28.57	19.43
TraesCS6A01G220700.1	Wheat	cytosol	28.57	15.67
Bra001548.1-P	Field mustard	nucleus	5.04	5.04

Protein Annotations

MapMan:17.1.2.1.29	Gene3D:3.30.390.110	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0019538	GO:GO:0022625	UniProt:K4C6Y1	InterPro:L28e/Mak16	PFAM:PF01778	PANTHER:PTHR10544
PANTHER:PTHR10544:SF5	InterPro:Ribosomal_L28e	EnsemblPlantsGene:Solyc06g062500.2	EnsemblPlants:Solyc06g062500.2.1	TMHMM:TMhelix	UniParc:UPI000276676B
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:39430479..39432577

Molecular Weight (calculated)

13093.2 Da

IEP (calculated)

11.351

GRAVY (calculated)

-0.321

Length

119 amino acids

Sequence
(BLAST)

001: MVPPVSYSAK SLTIFTIFTL TSILFSLANK KTVTIQPGGK DQSVLLATSK TKKQNKPSSL LNKSVMKKEF RCMAKAVSNQ VADNYYRPDL KKASLARLSA
101: VNKSLKIAKS GVKKRNRQA

Best Arabidopsis Sequence Match ( AT2G19730.2 )
(BLAST)

001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA

Arabidopsis Description

RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.