Factsheet for GSMUA_Achr1P05120_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g02560.t01	Wine grape	cytosol	77.7	77.18
Solyc03g121330.2.1	Tomato	nucleus	73.65	76.22
VIT_04s0008g00790.t01	Wine grape	cytosol	72.97	75.0
PGSC0003DMT400006681	Potato	extracellular	72.3	74.83
PGSC0003DMT400012339	Potato	cytosol	72.3	74.83
Os01t0706500-00	Rice	plastid	72.97	74.48
PGSC0003DMT400016607	Potato	cytosol	71.62	74.13
Solyc12g044720.1.1	Tomato	nucleus	27.03	74.07
EES01347	Sorghum	cytosol	72.3	73.79
GSMUA_Achr6P33480_001	Banana	nucleus	97.97	73.23
KXG22440	Sorghum	cytosol	71.62	72.6
Zm00001d009417_P006	Maize	cytosol	71.62	72.11
KRH09991	Soybean	cytosol, endoplasmic reticulum	72.3	71.33
KRH47170	Soybean	endoplasmic reticulum	72.3	71.33
GSMUA_Achr5P09610_001	Banana	plasma membrane	88.51	71.2
KRH23342	Soybean	endoplasmic reticulum	71.62	70.67
KRH44206	Soybean	nucleus	70.95	70.0
AT4G29410.1	Thale cress	cytosol	67.57	69.93
AT2G19730.2	Thale cress	cytosol	67.57	69.93
CDY21652	Canola	cytosol	67.57	69.93
CDX81940	Canola	cytosol	67.57	69.93
Bra031093.1-P	Field mustard	cytosol	67.57	69.93
Os02t0821200-01	Rice	plastid	43.24	69.57
TraesCS3D01G253300.1	Wheat	cytosol	66.89	69.23
TraesCS3B01G284300.1	Wheat	cytosol	66.89	69.23
CDY35881	Canola	cytosol	66.89	69.23
Bra039014.1-P	Field mustard	cytosol	66.89	69.23
HORVU3Hr1G066430.1	Barley	cytosol	66.89	69.23
TraesCS3A01G252700.1	Wheat	cytosol, golgi	66.22	68.53
CDX82715	Canola	cytosol	66.22	68.53
Bra036710.1-P	Field mustard	cytosol	66.22	68.53
CDY30215	Canola	cytosol	65.54	67.83
Bra011106.1-P	Field mustard	cytosol	65.54	67.83
TraesCS1D01G368700.1	Wheat	nucleus	66.89	67.35
TraesCS1B01G380800.1	Wheat	golgi	66.89	67.35
HORVU1Hr1G079370.1	Barley	cytosol, peroxisome, plastid	66.89	67.35
CDY14213	Canola	cytosol	64.86	67.13
Bra010329.1-P	Field mustard	cytosol	64.86	67.13
CDY62032	Canola	cytosol	64.19	66.43
Bra024145.1-P	Field mustard	cytosol	64.19	66.43
Os05t0541900-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	58.78	65.41
TraesCS2D01G587700.1	Wheat	cytosol, plastid	44.59	61.68
TraesCS3A01G379600.1	Wheat	cytosol	44.59	61.11
TraesCS5D01G549700.1	Wheat	cytosol	42.57	60.58
TraesCS7B01G324000.1	Wheat	plastid	42.57	60.58
Solyc06g062500.2.1	Tomato	endoplasmic reticulum, plastid	48.65	60.5
KRH45415	Soybean	mitochondrion	28.38	60.0
TraesCS1A01G215000.1	Wheat	cytosol	43.24	59.26
TraesCS3B01G505000.1	Wheat	golgi	44.59	58.41
CDY06809	Canola	extracellular	66.22	57.65
GSMUA_Achr1P28120_001	Banana	mitochondrion	89.19	56.9
CDY43499	Canola	mitochondrion	66.22	56.65
TraesCS7B01G281500.1	Wheat	cytosol	43.24	56.64
CDY03348	Canola	plastid	66.22	56.0
Zm00001d038865_P003	Maize	cytosol, mitochondrion, nucleus, plastid	69.59	54.5
TraesCS1A01G363700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	66.89	50.25
CDY41134	Canola	cytosol	20.27	50.0
Bra033205.1-P	Field mustard	cytosol	20.27	50.0
CDY48720	Canola	cytosol	66.22	48.28
CDX91669	Canola	mitochondrion	20.27	46.15
TraesCS6D01G263800.1	Wheat	cytosol	46.62	39.66
CDY47764	Canola	cytosol	51.35	38.78
TraesCS3D01G497400.1	Wheat	cytosol	45.27	38.51
TraesCS5A01G102300.1	Wheat	cytosol	45.27	38.29
Bra001548.1-P	Field mustard	nucleus	25.68	31.93
TraesCS6A01G220700.1	Wheat	cytosol	26.35	17.97

Protein Annotations

MapMan:17.1.2.1.29	Gene3D:3.30.390.110	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr1G05120_001	EnsemblPlants:GSMUA_Achr1P05120_001
EnsemblPlants:GSMUA_Achr1T05120_001	InterPro:L28e/Mak16	UniProt:M0RX70	PFAM:PF01778	PANTHER:PTHR10544	PANTHER:PTHR10544:SF5
InterPro:Ribosomal_L28e	UniParc:UPI000295F40A	:	:	:	:

Description

60S ribosomal protein L28-2 [Source:GMGC_GENE;Acc:GSMUA_Achr1G05120_001]

Coordinates

chr1:+:4230427..4234405

Molecular Weight (calculated)

16481.1 Da

IEP (calculated)

11.195

GRAVY (calculated)

-0.561

Length

148 amino acids

Sequence
(BLAST)

001: MATVPGPLIW EIVKKNNAFL VKQFGNDTAM VQFSKEPNNL YNVNSYKHSG LANKKTVTIQ AGGKDLSVAI ATTKTKKQNK PGSLYHRSVM KKEFCKLAKV
101: VMNQVTDNHY RPDLTNSALA RLSAVHRSLK VAKSGAKKRN RQALKVRN

Best Arabidopsis Sequence Match ( AT4G29410.2 )
(BLAST)

001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA

Arabidopsis Description

RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.