Factsheet for PGSC0003DMT400006681

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g121330.2.1	Tomato	nucleus	95.8	95.8
PGSC0003DMT400012339	Potato	cytosol	92.31	92.31
PGSC0003DMT400016607	Potato	cytosol	92.31	92.31
VIT_04s0008g00790.t01	Wine grape	cytosol	82.52	81.94
VIT_09s0002g02560.t01	Wine grape	cytosol	83.22	79.87
KRH09991	Soybean	cytosol, endoplasmic reticulum	81.82	78.0
KRH47170	Soybean	endoplasmic reticulum	81.82	78.0
KRH23342	Soybean	endoplasmic reticulum	81.12	77.33
KRH44206	Soybean	nucleus	81.12	77.33
Bra024145.1-P	Field mustard	cytosol	75.52	75.52
Bra011106.1-P	Field mustard	cytosol	74.83	74.83
Bra010329.1-P	Field mustard	cytosol	74.83	74.83
CDY14213	Canola	cytosol	74.83	74.83
CDY21652	Canola	cytosol	74.83	74.83
Bra039014.1-P	Field mustard	cytosol	74.13	74.13
CDY62032	Canola	cytosol	74.13	74.13
CDY30215	Canola	cytosol	74.13	74.13
CDY35881	Canola	cytosol	74.13	74.13
EES01347	Sorghum	cytosol	74.83	73.79
Bra036710.1-P	Field mustard	cytosol	73.43	73.43
AT2G19730.2	Thale cress	cytosol	73.43	73.43
CDX82715	Canola	cytosol	73.43	73.43
CDX81940	Canola	cytosol	73.43	73.43
Os01t0706500-00	Rice	plastid	74.13	73.1
Bra031093.1-P	Field mustard	cytosol	72.73	72.73
GSMUA_Achr1P05120_001	Banana	cytosol	74.83	72.3
AT4G29410.1	Thale cress	cytosol	71.33	71.33
KXG22440	Sorghum	cytosol	72.03	70.55
Zm00001d009417_P006	Maize	cytosol	72.03	70.07
Os02t0821200-01	Rice	plastid	43.36	67.39
HORVU1Hr1G079370.1	Barley	cytosol, peroxisome, plastid	69.23	67.35
TraesCS1D01G368700.1	Wheat	nucleus	69.23	67.35
TraesCS1B01G380800.1	Wheat	golgi	69.23	67.35
TraesCS3D01G253300.1	Wheat	cytosol	67.13	67.13
HORVU3Hr1G066430.1	Barley	cytosol	67.13	67.13
TraesCS3B01G284300.1	Wheat	cytosol	67.13	67.13
TraesCS3A01G252700.1	Wheat	cytosol, golgi	66.43	66.43
TraesCS2D01G587700.1	Wheat	cytosol, plastid	47.55	63.55
CDY06809	Canola	extracellular	75.52	63.53
TraesCS5D01G549700.1	Wheat	cytosol	46.15	63.46
TraesCS3A01G379600.1	Wheat	cytosol	47.55	62.96
CDY43499	Canola	mitochondrion	75.52	62.43
CDY41134	Canola	cytosol	25.87	61.67
Bra033205.1-P	Field mustard	cytosol	25.87	61.67
KRH45415	Soybean	mitochondrion	30.07	61.43
Os05t0541900-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	56.64	60.9
GSMUA_Achr5P09610_001	Banana	plasma membrane	77.62	60.33
CDY03348	Canola	plastid	73.43	60.0
TraesCS7B01G324000.1	Wheat	plastid	43.36	59.62
TraesCS3B01G505000.1	Wheat	golgi	46.85	59.29
TraesCS1A01G215000.1	Wheat	cytosol	44.76	59.26
TraesCS7B01G281500.1	Wheat	cytosol	45.45	57.52
CDX91669	Canola	mitochondrion	25.87	56.92
GSMUA_Achr6P33480_001	Banana	nucleus	74.83	54.04
Zm00001d038865_P003	Maize	cytosol, mitochondrion, nucleus, plastid	70.63	53.44
CDY48720	Canola	cytosol	73.43	51.72
TraesCS1A01G363700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	69.23	50.25
GSMUA_Achr1P28120_001	Banana	mitochondrion	77.62	47.84
CDY47764	Canola	cytosol	56.64	41.33
TraesCS6D01G263800.1	Wheat	cytosol	48.25	39.66
TraesCS3D01G497400.1	Wheat	cytosol	46.85	38.51
TraesCS5A01G102300.1	Wheat	cytosol	46.15	37.71
Bra001548.1-P	Field mustard	nucleus	27.97	33.61
TraesCS6A01G220700.1	Wheat	cytosol	30.07	19.82

Protein Annotations

MapMan:17.1.2.1.29	Gene3D:3.30.390.110	ProteinID:ABA46762	ProteinID:ABA46762.1	ProteinID:ABA46763	ProteinID:ABA46763.1
EMBL:DQ200369	EMBL:DQ200370	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:L28e/Mak16	UniProt:M0ZRT6
PFAM:PF01778	EnsemblPlantsGene:PGSC0003DMG400002597	PGSC:PGSC0003DMG400002597	EnsemblPlants:PGSC0003DMT400006681	PANTHER:PTHR10544	PANTHER:PTHR10544:SF5
InterPro:Ribosomal_L28e	UniParc:UPI0002950388	:	:	:	:

Description

Ribosomal protein L28 [Source:PGSC_GENE;Acc:PGSC0003DMG400002597]

Coordinates

chr3:+:60599527..60601611

Molecular Weight (calculated)

15861.3 Da

IEP (calculated)

11.237

GRAVY (calculated)

-0.688

Length

143 amino acids

Sequence
(BLAST)

001: MTTVPGQLVW EIVKKNNSFL VKEFGNGSAG VVFSKEPNNL CNLHSYKHSG LANKKTVTIQ PEGKDKSVLL ATSKTKKQNK PSSLLNKSVM KKEFRRMAKA
101: VTNQVGDNYY RPDLKKAALA RLSAVNRSLK VTKSGAKKRN RQA

Best Arabidopsis Sequence Match ( AT2G19730.2 )
(BLAST)

001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA

Arabidopsis Description

RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.