Factsheet for GSMUA_Achr1P28120_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P05120_001	Banana	cytosol	56.9	89.19
Solyc12g044720.1.1	Tomato	nucleus	18.97	81.48
VIT_09s0002g02560.t01	Wine grape	cytosol	50.86	79.19
Solyc03g121330.2.1	Tomato	nucleus	48.28	78.32
VIT_04s0008g00790.t01	Wine grape	cytosol	48.28	77.78
PGSC0003DMT400006681	Potato	extracellular	47.84	77.62
Os01t0706500-00	Rice	plastid	48.28	77.24
PGSC0003DMT400012339	Potato	cytosol	47.41	76.92
EES01347	Sorghum	cytosol	47.84	76.55
KXG22440	Sorghum	cytosol	47.41	75.34
Zm00001d009417_P006	Maize	cytosol	46.98	74.15
PGSC0003DMT400016607	Potato	cytosol	45.69	74.13
GSMUA_Achr5P09610_001	Banana	plasma membrane	58.62	73.91
KRH47170	Soybean	endoplasmic reticulum	47.41	73.33
KRH09991	Soybean	cytosol, endoplasmic reticulum	47.41	73.33
Os02t0821200-01	Rice	plastid	28.88	72.83
TraesCS3D01G253300.1	Wheat	cytosol	44.4	72.03
HORVU3Hr1G066430.1	Barley	cytosol	44.4	72.03
TraesCS3B01G284300.1	Wheat	cytosol	44.4	72.03
CDY35881	Canola	cytosol	44.4	72.03
Bra039014.1-P	Field mustard	cytosol	44.4	72.03
CDY21652	Canola	cytosol	44.4	72.03
KRH23342	Soybean	endoplasmic reticulum	46.55	72.0
KRH44206	Soybean	nucleus	46.55	72.0
TraesCS3A01G252700.1	Wheat	cytosol, golgi	43.97	71.33
Bra031093.1-P	Field mustard	cytosol	43.97	71.33
Bra036710.1-P	Field mustard	cytosol	43.97	71.33
Bra011106.1-P	Field mustard	cytosol	43.97	71.33
CDX82715	Canola	cytosol	43.97	71.33
CDX81940	Canola	cytosol	43.97	71.33
AT4G29410.1	Thale cress	cytosol	43.53	70.63
AT2G19730.2	Thale cress	cytosol	43.53	70.63
TraesCS1D01G368700.1	Wheat	nucleus	44.4	70.07
HORVU1Hr1G079370.1	Barley	cytosol, peroxisome, plastid	44.4	70.07
Bra010329.1-P	Field mustard	cytosol	43.1	69.93
CDY14213	Canola	cytosol	43.1	69.93
TraesCS1B01G380800.1	Wheat	golgi	43.97	69.39
CDY62032	Canola	cytosol	42.67	69.23
Bra024145.1-P	Field mustard	cytosol	42.67	69.23
CDY30215	Canola	cytosol	42.67	69.23
GSMUA_Achr6P33480_001	Banana	nucleus	57.76	67.68
Os05t0541900-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	37.93	66.17
TraesCS2D01G587700.1	Wheat	cytosol, plastid	29.74	64.49
TraesCS5D01G549700.1	Wheat	cytosol	28.45	63.46
Solyc06g062500.2.1	Tomato	endoplasmic reticulum, plastid	32.33	63.03
TraesCS3A01G379600.1	Wheat	cytosol	29.31	62.96
CDY06809	Canola	extracellular	46.12	62.94
TraesCS7B01G324000.1	Wheat	plastid	28.02	62.5
TraesCS1A01G215000.1	Wheat	cytosol	28.88	62.04
TraesCS3B01G505000.1	Wheat	golgi	29.74	61.06
CDY03348	Canola	plastid	45.69	60.57
CDY43499	Canola	mitochondrion	44.83	60.12
Zm00001d038865_P003	Maize	cytosol, mitochondrion, nucleus, plastid	47.84	58.73
KRH45415	Soybean	mitochondrion	17.67	58.57
TraesCS7B01G281500.1	Wheat	cytosol	28.45	58.41
CDY41134	Canola	cytosol	14.66	56.67
Bra033205.1-P	Field mustard	cytosol	14.66	56.67
TraesCS1A01G363700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	47.41	55.84
CDY48720	Canola	cytosol	46.12	52.71
CDX91669	Canola	mitochondrion	12.5	44.62
TraesCS6D01G263800.1	Wheat	cytosol	32.76	43.68
TraesCS3D01G497400.1	Wheat	cytosol	31.03	41.38
TraesCS5A01G102300.1	Wheat	cytosol	31.03	41.14
CDY47764	Canola	cytosol	34.05	40.31
Bra001548.1-P	Field mustard	nucleus	19.4	37.82
TraesCS6A01G220700.1	Wheat	cytosol	20.69	22.12

Protein Annotations

MapMan:17.1.2.1.29	Gene3D:3.30.390.110	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr1G28120_001	EnsemblPlants:GSMUA_Achr1P28120_001
EnsemblPlants:GSMUA_Achr1T28120_001	InterPro:L28e/Mak16	UniProt:M0S3R9	PFAM:PF01778	PANTHER:PTHR10544	PANTHER:PTHR10544:SF5
InterPro:Ribosomal_L28e	UniParc:UPI0002949F1A	SEG:seg	:	:	:

Description

60S ribosomal protein L28-2 [Source:GMGC_GENE;Acc:GSMUA_Achr1G28120_001]

Coordinates

chr1:+:27052433..27056112

Molecular Weight (calculated)

26331.5 Da

IEP (calculated)

11.300

GRAVY (calculated)

-0.378

Length

232 amino acids

Sequence
(BLAST)

001: MCCRESLRPR LQRLHVAYRI IPDHIRTIQQ HLLVLLRLLK AVRPIADGDL GFHAAFRTPP SHAALREADG SLHRCLKLVW FDIEMATVPG PLIWEIVKKN
101: NAFLVKQFGN STAMVQFSKE PNNLYNVNSY KHSGLANKKS MTIQPSGKDL SVVLATAKTK KQNKPGSLYH RSVMKKEFRK MAKVVMNQVT DNYYRPDLTK
201: AALARLSVVH RSLKVAKSGA KKRNRQAVKA RN

Best Arabidopsis Sequence Match ( AT4G29410.2 )
(BLAST)

001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA

Arabidopsis Description

RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.