Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH47170 | Soybean | endoplasmic reticulum | 97.33 | 97.33 |
| Solyc12g044720.1.1 | Tomato | nucleus | 32.67 | 90.74 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 89.33 | 89.33 |
| KRH23342 | Soybean | endoplasmic reticulum | 88.0 | 88.0 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 82.67 | 83.22 |
| PGSC0003DMT400012339 | Potato | cytosol | 78.67 | 82.52 |
| Solyc03g121330.2.1 | Tomato | nucleus | 78.0 | 81.82 |
| PGSC0003DMT400006681 | Potato | extracellular | 77.33 | 81.12 |
| PGSC0003DMT400016607 | Potato | cytosol | 76.67 | 80.42 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 74.67 | 77.78 |
| Bra011106.1-P | Field mustard | cytosol | 70.67 | 74.13 |
| EES01347 | Sorghum | cytosol | 70.67 | 73.1 |
| Os01t0706500-00 | Rice | plastid | 70.67 | 73.1 |
| CDY62032 | Canola | cytosol | 68.67 | 72.03 |
| CDY35881 | Canola | cytosol | 68.67 | 72.03 |
| CDY30215 | Canola | cytosol | 68.67 | 72.03 |
| CDY14213 | Canola | cytosol | 68.67 | 72.03 |
| Bra039014.1-P | Field mustard | cytosol | 68.67 | 72.03 |
| Bra010329.1-P | Field mustard | cytosol | 68.67 | 72.03 |
| AT2G19730.2 | Thale cress | cytosol | 68.67 | 72.03 |
| Os02t0821200-01 | Rice | plastid | 44.0 | 71.74 |
| KRH45415 | Soybean | mitochondrion | 33.33 | 71.43 |
| AT4G29410.1 | Thale cress | cytosol | 68.0 | 71.33 |
| Bra036710.1-P | Field mustard | cytosol | 68.0 | 71.33 |
| Bra024145.1-P | Field mustard | cytosol | 68.0 | 71.33 |
| CDX81940 | Canola | cytosol | 68.0 | 71.33 |
| CDX82715 | Canola | cytosol | 68.0 | 71.33 |
| CDY21652 | Canola | cytosol | 68.0 | 71.33 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 70.0 | 70.95 |
| Zm00001d009417_P006 | Maize | cytosol | 69.33 | 70.75 |
| Bra031093.1-P | Field mustard | cytosol | 67.33 | 70.63 |
| KXG22440 | Sorghum | cytosol | 68.67 | 70.55 |
| HORVU3Hr1G066430.1 | Barley | cytosol | 66.67 | 69.93 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 66.67 | 69.93 |
| TraesCS3B01G284300.1 | Wheat | cytosol | 66.67 | 69.93 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 55.33 | 69.75 |
| TraesCS3A01G252700.1 | Wheat | cytosol, golgi | 66.0 | 69.23 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 65.33 | 66.67 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 64.67 | 65.99 |
| TraesCS1B01G380800.1 | Wheat | golgi | 64.67 | 65.99 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 45.33 | 62.96 |
| CDY06809 | Canola | extracellular | 71.33 | 62.94 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 44.67 | 62.62 |
| TraesCS7B01G324000.1 | Wheat | plastid | 43.33 | 62.5 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 43.33 | 62.5 |
| CDY43499 | Canola | mitochondrion | 71.33 | 61.85 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 53.33 | 60.15 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 73.33 | 59.78 |
| TraesCS3B01G505000.1 | Wheat | golgi | 44.67 | 59.29 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 42.0 | 58.33 |
| Bra033205.1-P | Field mustard | cytosol | 23.33 | 58.33 |
| CDY41134 | Canola | cytosol | 23.33 | 58.33 |
| CDY03348 | Canola | plastid | 68.0 | 58.29 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 43.33 | 57.52 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 68.67 | 54.5 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 69.33 | 52.53 |
| CDY48720 | Canola | cytosol | 68.0 | 50.25 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 64.67 | 49.24 |
| CDX91669 | Canola | mitochondrion | 21.33 | 49.23 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 72.0 | 46.55 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 48.0 | 41.38 |
| CDY47764 | Canola | cytosol | 51.33 | 39.29 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 45.33 | 39.08 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 44.0 | 37.71 |
| Bra001548.1-P | Field mustard | nucleus | 26.67 | 33.61 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 29.33 | 20.28 |
Protein Annotations
| MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | EMBL:ACUP02004911 | EnsemblPlantsGene:GLYMA_08G196500 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0022625 | UniProt:I1KUX8 | EnsemblPlants:KRH44206 | ProteinID:KRH44206 | ProteinID:KRH44206.1 |
| InterPro:L28e/Mak16 | PFAM:PF01778 | PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 | InterPro:Ribosomal_L28e | UniParc:UPI00023C5B84 |
Description
hypothetical protein
Coordinates
chr8:+:15847813..15849984
Molecular Weight (calculated)
16872.7 Da
IEP (calculated)
11.604
GRAVY (calculated)
-0.673
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVPGQLVW EIVKKNNSFL VKQFGRGTQS VEFSRESNNL YNLNSFKYSG LANKKTVTVQ PEGKDQAVLL ATTKTKKQNK PAALLHKSVM KKEFRRMAKA
101: VENQVAKNYY RPDLKKAALA RLSAVHRSLK VAKSGVKKRN RQGVRVAGRK
101: VENQVAKNYY RPDLKKAALA RLSAVHRSLK VAKSGVKKRN RQGVRVAGRK
001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
Arabidopsis Description
RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.