Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- golgi 1
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41134 | Canola | cytosol | 66.67 | 60.0 |
| Bra033205.1-P | Field mustard | cytosol | 66.67 | 60.0 |
| Os02t0821200-01 | Rice | plastid | 75.93 | 44.57 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 88.89 | 40.34 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 98.15 | 35.33 |
| KRH23342 | Soybean | endoplasmic reticulum | 96.3 | 34.67 |
| Solyc03g121330.2.1 | Tomato | nucleus | 88.89 | 33.57 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 92.59 | 33.56 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 88.89 | 33.33 |
| KRH47170 | Soybean | endoplasmic reticulum | 92.59 | 33.33 |
| KRH44206 | Soybean | nucleus | 90.74 | 32.67 |
| EES01347 | Sorghum | cytosol | 79.63 | 29.66 |
| Os01t0706500-00 | Rice | plastid | 79.63 | 29.66 |
| AT2G19730.2 | Thale cress | cytosol | 77.78 | 29.37 |
| HORVU3Hr1G066430.1 | Barley | cytosol | 77.78 | 29.37 |
| CDY14213 | Canola | cytosol | 77.78 | 29.37 |
| TraesCS3B01G284300.1 | Wheat | cytosol | 77.78 | 29.37 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 77.78 | 29.37 |
| Bra011106.1-P | Field mustard | cytosol | 77.78 | 29.37 |
| Bra010329.1-P | Field mustard | cytosol | 77.78 | 29.37 |
| TraesCS3A01G252700.1 | Wheat | cytosol, golgi | 75.93 | 28.67 |
| AT4G29410.1 | Thale cress | cytosol | 75.93 | 28.67 |
| CDY62032 | Canola | cytosol | 75.93 | 28.67 |
| CDX81940 | Canola | cytosol | 75.93 | 28.67 |
| CDY30215 | Canola | cytosol | 75.93 | 28.67 |
| CDY21652 | Canola | cytosol | 75.93 | 28.67 |
| Bra024145.1-P | Field mustard | cytosol | 75.93 | 28.67 |
| KXG22440 | Sorghum | cytosol | 75.93 | 28.08 |
| Bra039014.1-P | Field mustard | cytosol | 74.07 | 27.97 |
| CDX82715 | Canola | cytosol | 74.07 | 27.97 |
| CDY35881 | Canola | cytosol | 74.07 | 27.97 |
| Bra036710.1-P | Field mustard | cytosol | 74.07 | 27.97 |
| Bra031093.1-P | Field mustard | cytosol | 74.07 | 27.97 |
| Zm00001d009417_P006 | Maize | cytosol | 74.07 | 27.21 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 74.07 | 27.21 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 74.07 | 27.03 |
| TraesCS1B01G380800.1 | Wheat | golgi | 72.22 | 26.53 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 72.22 | 26.53 |
| CDY06809 | Canola | extracellular | 77.78 | 24.71 |
| CDY43499 | Canola | mitochondrion | 77.78 | 24.28 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 81.48 | 23.91 |
| CDY03348 | Canola | plastid | 74.07 | 22.86 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 75.93 | 21.69 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 74.07 | 20.2 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 72.22 | 19.8 |
| CDY48720 | Canola | cytosol | 74.07 | 19.7 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 81.48 | 18.97 |
| CDY47764 | Canola | cytosol | 62.96 | 17.35 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 35.19 | 14.29 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 20.37 | 9.73 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 18.52 | 9.62 |
| TraesCS7B01G324000.1 | Wheat | plastid | 18.52 | 9.62 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 18.52 | 9.35 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 18.52 | 9.26 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 18.52 | 9.26 |
| TraesCS3B01G505000.1 | Wheat | golgi | 18.52 | 8.85 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 25.93 | 8.05 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 20.37 | 6.32 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 16.67 | 5.14 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 20.37 | 5.07 |
| CDX91669 | Canola | mitochondrion | 5.56 | 4.62 |
| Bra001548.1-P | Field mustard | nucleus | 1.85 | 0.84 |
| KRH45415 | Soybean | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc12g044720.1.1 | EnsemblPlantsGene:Solyc12g044720.1 | Gene3D:3.30.390.110 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:Ribosomal_L28e |
| PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 | UniParc:UPI0002769729 | UniProt:K4DFF7 | MapMan:17.1.2.1.29 | : |
Description
No Description!
Coordinates
chr12:-:37907728..37908678
Molecular Weight (calculated)
6205.7 Da
IEP (calculated)
12.127
GRAVY (calculated)
-0.878
Length
54 amino acids
Sequence
(BLAST)
(BLAST)
1: MKKEFRRMAK AVTNQVADNY YRPDLKKAAL ARLSAVNRSL RVAKSGVKKR NRQA
001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
Arabidopsis Description
RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.