Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0821200-01 | Rice | plastid | 55.1 | 88.04 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 80.27 | 80.27 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 79.59 | 79.59 |
| TraesCS1B01G380800.1 | Wheat | golgi | 78.91 | 78.91 |
| Solyc12g044720.1.1 | Tomato | nucleus | 27.21 | 74.07 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 53.74 | 73.83 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 53.74 | 73.15 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 51.7 | 73.08 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 65.99 | 72.93 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 73.47 | 72.48 |
| Solyc03g121330.2.1 | Tomato | nucleus | 70.07 | 72.03 |
| PGSC0003DMT400006681 | Potato | extracellular | 70.07 | 72.03 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 72.11 | 71.62 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 70.07 | 71.53 |
| PGSC0003DMT400012339 | Potato | cytosol | 69.39 | 71.33 |
| TraesCS7B01G324000.1 | Wheat | plastid | 50.34 | 71.15 |
| PGSC0003DMT400016607 | Potato | cytosol | 68.71 | 70.63 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 90.48 | 70.37 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 71.43 | 70.0 |
| TraesCS3B01G505000.1 | Wheat | golgi | 53.74 | 69.91 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 51.02 | 69.44 |
| KRH44206 | Soybean | nucleus | 70.75 | 69.33 |
| KRH47170 | Soybean | endoplasmic reticulum | 70.75 | 69.33 |
| AT2G19730.2 | Thale cress | cytosol | 67.35 | 69.23 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 53.06 | 69.03 |
| KRH23342 | Soybean | endoplasmic reticulum | 70.07 | 68.67 |
| Bra011106.1-P | Field mustard | cytosol | 66.67 | 68.53 |
| CDY35881 | Canola | cytosol | 66.67 | 68.53 |
| Bra039014.1-P | Field mustard | cytosol | 66.67 | 68.53 |
| CDX82715 | Canola | cytosol | 65.99 | 67.83 |
| AT4G29410.1 | Thale cress | cytosol | 65.99 | 67.83 |
| Bra031093.1-P | Field mustard | cytosol | 65.99 | 67.83 |
| Bra036710.1-P | Field mustard | cytosol | 65.99 | 67.83 |
| CDX81940 | Canola | cytosol | 65.99 | 67.83 |
| CDY21652 | Canola | cytosol | 65.99 | 67.83 |
| CDY14213 | Canola | cytosol | 65.31 | 67.13 |
| Bra010329.1-P | Field mustard | cytosol | 65.31 | 67.13 |
| Bra024145.1-P | Field mustard | cytosol | 64.63 | 66.43 |
| CDY62032 | Canola | cytosol | 64.63 | 66.43 |
| CDY30215 | Canola | cytosol | 64.63 | 66.43 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 79.59 | 59.39 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 74.15 | 59.24 |
| KRH45415 | Soybean | mitochondrion | 27.89 | 58.57 |
| CDY06809 | Canola | extracellular | 67.35 | 58.24 |
| CDY43499 | Canola | mitochondrion | 67.35 | 57.23 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 46.26 | 57.14 |
| CDY03348 | Canola | plastid | 65.99 | 55.43 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 71.43 | 53.03 |
| Bra033205.1-P | Field mustard | cytosol | 21.09 | 51.67 |
| CDY41134 | Canola | cytosol | 21.09 | 51.67 |
| CDX91669 | Canola | mitochondrion | 22.45 | 50.77 |
| CDY48720 | Canola | cytosol | 65.99 | 47.78 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 55.78 | 47.13 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 74.15 | 46.98 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 54.42 | 45.98 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 54.42 | 45.71 |
| CDY47764 | Canola | cytosol | 51.7 | 38.78 |
| Bra001548.1-P | Field mustard | nucleus | 25.17 | 31.09 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 34.69 | 23.5 |
Protein Annotations
| EntrezGene:100281129 | MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | UniProt:A0A1D6FJA8 | ProteinID:AQK91843.1 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:L28e/Mak16 | PFAM:PF01778 | PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 | InterPro:Ribosomal_L28e |
| UniParc:UPI00084560B0 | EnsemblPlantsGene:Zm00001d009417 | EnsemblPlants:Zm00001d009417_P006 | EnsemblPlants:Zm00001d009417_T006 | : | : |
Description
60S ribosomal protein L28-1
Coordinates
chr8:-:63479761..63482508
Molecular Weight (calculated)
16439.0 Da
IEP (calculated)
11.232
GRAVY (calculated)
-0.713
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVPGDLIW QIVRKNNSFL VKQFGNGNAK VQFTKEPNNL YNVHSYKYSG LANKKTVTIQ PAAGKDSAVV LSTTKTKKQN TPAKLSHKSV MRKEFRKMAK
101: AVKNQVVGDN YYRPDLTKSA LGRLSSVYRS LQVAKSGVKK KNRQPTH
101: AVKNQVVGDN YYRPDLTKSA LGRLSSVYRS LQVAKSGVKK KNRQPTH
001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
Arabidopsis Description
RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.