Factsheet for Os05t0541900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G587700.1	Wheat	cytosol, plastid	60.15	74.77
TraesCS5D01G549700.1	Wheat	cytosol	57.14	73.08
TraesCS3A01G379600.1	Wheat	cytosol	58.65	72.22
TraesCS7B01G324000.1	Wheat	plastid	56.39	72.12
TraesCS3B01G505000.1	Wheat	golgi	59.4	69.91
TraesCS1A01G215000.1	Wheat	cytosol	56.39	69.44
TraesCS7B01G281500.1	Wheat	cytosol	57.14	67.26
KXG22440	Sorghum	cytosol	72.93	66.44
Zm00001d009417_P006	Maize	cytosol	72.93	65.99
Os01t0706500-00	Rice	plastid	70.68	64.83
HORVU1Hr1G079370.1	Barley	cytosol, peroxisome, plastid	67.67	61.22
TraesCS1D01G368700.1	Wheat	nucleus	67.67	61.22
TraesCS1B01G380800.1	Wheat	golgi	66.92	60.54
GSMUA_Achr1P05120_001	Banana	cytosol	65.41	58.78
PGSC0003DMT400012339	Potato	cytosol	63.16	58.74
Os02t0821200-01	Rice	plastid	40.6	58.7
PGSC0003DMT400016607	Potato	cytosol	61.65	57.34
VIT_04s0008g00790.t01	Wine grape	cytosol	61.65	56.94
AT2G19730.2	Thale cress	cytosol	60.9	56.64
PGSC0003DMT400006681	Potato	extracellular	60.9	56.64
VIT_09s0002g02560.t01	Wine grape	cytosol	63.16	56.38
Solyc03g121330.2.1	Tomato	nucleus	60.15	55.94
Bra011106.1-P	Field mustard	cytosol	59.4	55.24
AT4G29410.1	Thale cress	cytosol	58.65	54.55
Bra039014.1-P	Field mustard	cytosol	58.65	54.55
CDY35881	Canola	cytosol	58.65	54.55
KRH45415	Soybean	mitochondrion	28.57	54.29
CDY62032	Canola	cytosol	57.89	53.85
CDY30215	Canola	cytosol	57.89	53.85
CDY21652	Canola	cytosol	57.89	53.85
CDY14213	Canola	cytosol	57.89	53.85
CDX82715	Canola	cytosol	57.89	53.85
CDX81940	Canola	cytosol	57.89	53.85
Bra010329.1-P	Field mustard	cytosol	57.89	53.85
Bra036710.1-P	Field mustard	cytosol	57.89	53.85
Bra031093.1-P	Field mustard	cytosol	57.89	53.85
Bra024145.1-P	Field mustard	cytosol	57.89	53.85
KRH44206	Soybean	nucleus	60.15	53.33
KRH47170	Soybean	endoplasmic reticulum	60.15	53.33
KRH09991	Soybean	cytosol, endoplasmic reticulum	60.15	53.33
KRH23342	Soybean	endoplasmic reticulum	59.4	52.67
Zm00001d038865_P003	Maize	cytosol, mitochondrion, nucleus, plastid	72.18	50.79
GSMUA_Achr5P09610_001	Banana	plasma membrane	66.92	48.37
CDX91669	Canola	mitochondrion	23.31	47.69
CDY06809	Canola	extracellular	60.15	47.06
CDY43499	Canola	mitochondrion	60.15	46.24
TraesCS1A01G363700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	67.67	45.69
TraesCS6D01G263800.1	Wheat	cytosol	58.65	44.83
TraesCS3D01G497400.1	Wheat	cytosol	58.65	44.83
TraesCS5A01G102300.1	Wheat	cytosol	57.89	44.0
CDY03348	Canola	plastid	57.89	44.0
GSMUA_Achr6P33480_001	Banana	nucleus	65.41	43.94
Solyc06g062500.2.1	Tomato	endoplasmic reticulum, plastid	37.59	42.02
CDY48720	Canola	cytosol	57.89	37.93
GSMUA_Achr1P28120_001	Banana	mitochondrion	66.17	37.93
Solyc12g044720.1.1	Tomato	nucleus	14.29	35.19
Bra001548.1-P	Field mustard	nucleus	28.57	31.93
CDY47764	Canola	cytosol	42.86	29.08
CDY41134	Canola	cytosol	10.53	23.33
Bra033205.1-P	Field mustard	cytosol	10.53	23.33
TraesCS6A01G220700.1	Wheat	cytosol	33.08	20.28

Protein Annotations

MapMan:17.1.2.1.29	Gene3D:3.30.390.110	ProteinID:AAV67825.1	EMBL:AK066599	ProteinID:BAS95130.1	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:L28e/Mak16	EnsemblPlantsGene:Os05g0541900	EnsemblPlants:Os05t0541900-01	PFAM:PF01778	PANTHER:PTHR10544
PANTHER:PTHR10544:SF5	UniProt:Q5TKP2	InterPro:Ribosomal_L28e	UniParc:UPI000046F542	SEG:seg	:

Description

Similar to 60S ribosomal protein l28. (Os05t0541900-01)

Coordinates

chr5:-:26902013..26905007

Molecular Weight (calculated)

14885.4 Da

IEP (calculated)

10.753

GRAVY (calculated)

-0.224

Length

133 amino acids

Sequence
(BLAST)

001: MATVPEPLIW EIVKKNNCFL VKQFGNSNAK VQFTKEPNNL YNVHSYKHSG LANKKTVTIQ PSGVKDAAVV LSTTKTKKQN APAKLYHKSV MRKEFRKMAK
101: AVKNQVLARE TTSLHSFLSL LCLAMLEALN ALL

Best Arabidopsis Sequence Match ( AT4G29410.2 )
(BLAST)

001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA

Arabidopsis Description

RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.