Factsheet for VIT_04s0008g00790.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044720.1.1	Tomato	nucleus	33.33	88.89
Solyc03g121330.2.1	Tomato	nucleus	82.64	83.22
PGSC0003DMT400006681	Potato	extracellular	81.94	82.52
PGSC0003DMT400012339	Potato	cytosol	81.94	82.52
VIT_09s0002g02560.t01	Wine grape	cytosol	84.03	81.21
PGSC0003DMT400016607	Potato	cytosol	79.17	79.72
KRH09991	Soybean	cytosol, endoplasmic reticulum	79.17	76.0
CDY21652	Canola	cytosol	75.0	75.52
KRH23342	Soybean	endoplasmic reticulum	78.47	75.33
KRH47170	Soybean	endoplasmic reticulum	78.47	75.33
AT2G19730.2	Thale cress	cytosol	74.31	74.83
KRH44206	Soybean	nucleus	77.78	74.67
Bra039014.1-P	Field mustard	cytosol	72.92	73.43
Bra011106.1-P	Field mustard	cytosol	72.92	73.43
CDY35881	Canola	cytosol	72.92	73.43
GSMUA_Achr1P05120_001	Banana	cytosol	75.0	72.97
Bra036710.1-P	Field mustard	cytosol	72.22	72.73
CDY14213	Canola	cytosol	72.22	72.73
Bra010329.1-P	Field mustard	cytosol	72.22	72.73
CDX82715	Canola	cytosol	72.22	72.73
CDX81940	Canola	cytosol	72.22	72.73
Bra031093.1-P	Field mustard	cytosol	72.22	72.73
Bra024145.1-P	Field mustard	cytosol	71.53	72.03
CDY62032	Canola	cytosol	71.53	72.03
KXG22440	Sorghum	cytosol	72.92	71.92
Os01t0706500-00	Rice	plastid	72.22	71.72
AT4G29410.1	Thale cress	cytosol	70.83	71.33
CDY30215	Canola	cytosol	70.83	71.33
EES01347	Sorghum	cytosol	71.53	71.03
Zm00001d009417_P006	Maize	cytosol	71.53	70.07
Os02t0821200-01	Rice	plastid	44.44	69.57
Solyc06g062500.2.1	Tomato	endoplasmic reticulum, plastid	56.25	68.07
HORVU3Hr1G066430.1	Barley	cytosol	66.67	67.13
TraesCS3B01G284300.1	Wheat	cytosol	66.67	67.13
TraesCS3D01G253300.1	Wheat	cytosol	66.67	67.13
TraesCS3A01G252700.1	Wheat	cytosol, golgi	65.97	66.43
HORVU1Hr1G079370.1	Barley	cytosol, peroxisome, plastid	65.97	64.63
TraesCS1D01G368700.1	Wheat	nucleus	65.28	63.95
TraesCS1B01G380800.1	Wheat	golgi	64.58	63.27
KRH45415	Soybean	mitochondrion	30.56	62.86
CDY06809	Canola	extracellular	73.61	62.35
Os05t0541900-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	56.94	61.65
GSMUA_Achr5P09610_001	Banana	plasma membrane	78.47	61.41
CDY43499	Canola	mitochondrion	73.61	61.27
CDY41134	Canola	cytosol	25.0	60.0
Bra033205.1-P	Field mustard	cytosol	25.0	60.0
CDY03348	Canola	plastid	72.22	59.43
TraesCS3A01G379600.1	Wheat	cytosol	44.44	59.26
TraesCS2D01G587700.1	Wheat	cytosol, plastid	43.75	58.88
TraesCS5D01G549700.1	Wheat	cytosol	42.36	58.65
TraesCS1A01G215000.1	Wheat	cytosol	42.36	56.48
TraesCS7B01G324000.1	Wheat	plastid	40.28	55.77
Zm00001d038865_P003	Maize	cytosol, mitochondrion, nucleus, plastid	72.22	55.03
GSMUA_Achr6P33480_001	Banana	nucleus	74.31	54.04
TraesCS3B01G505000.1	Wheat	golgi	42.36	53.98
CDX91669	Canola	mitochondrion	23.61	52.31
TraesCS7B01G281500.1	Wheat	cytosol	40.97	52.21
CDY48720	Canola	cytosol	72.22	51.23
GSMUA_Achr1P28120_001	Banana	mitochondrion	77.78	48.28
TraesCS1A01G363700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	65.28	47.72
CDY47764	Canola	cytosol	55.56	40.82
TraesCS6D01G263800.1	Wheat	cytosol	45.14	37.36
TraesCS5A01G102300.1	Wheat	cytosol	43.06	35.43
TraesCS3D01G497400.1	Wheat	cytosol	42.36	35.06
Bra001548.1-P	Field mustard	nucleus	26.39	31.93
TraesCS6A01G220700.1	Wheat	cytosol	28.47	18.89

Protein Annotations

EntrezGene:100245594	wikigene:100245594	MapMan:17.1.2.1.29	Gene3D:3.30.390.110	UniProt:A5AY29	EMBL:AM439835
ProteinID:CAN67280	ProteinID:CAN67280.1	ProteinID:CBI20620	ProteinID:CBI20620.3	EMBL:FN595231	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:L28e/Mak16	EntrezGene:LOC100245594	wikigene:LOC100245594
PFAM:PF01778	PANTHER:PTHR10544	PANTHER:PTHR10544:SF5	InterPro:Ribosomal_L28e	TIGR:TC58315	TIGR:TC58670
UniParc:UPI000151F946	ArrayExpress:VIT_04s0008g00790	EnsemblPlantsGene:VIT_04s0008g00790	EnsemblPlants:VIT_04s0008g00790.t01	RefSeq:XP_002277207	RefSeq:XP_002277207.1
RefSeq:XP_010648326.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:684399..687056

Molecular Weight (calculated)

15933.5 Da

IEP (calculated)

11.378

GRAVY (calculated)

-0.472

Length

144 amino acids

Sequence
(BLAST)

001: MANVPGPLIW EIVKKNNSFL VKEFGNGTAK VQFSKETNNL CNVHSFKHSG LANRKTVTIQ PGGKDLSVVL ATSKTKKQNN PSISLQKSVM KKEFPRMAKA
101: VVNQVSDNYY RVDLKKAALA RLSAVHRSLK VAKSGVKKRN RQAV

Best Arabidopsis Sequence Match ( AT2G19730.2 )
(BLAST)

001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA

Arabidopsis Description

RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.